BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480113
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04840.1 | Symbols: | Protein of unknown function (DUF295) ... 1404 0.0
AT2G04810.1 | Symbols: | Protein of unknown function (DUF295) ... 736 0.0
AT2G04830.1 | Symbols: | Protein of unknown function (DUF295) ... 350 2e-95
AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 182 9e-45
> AT2G04840.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1697009-1698240 FORWARD LENGTH=1170
Length=1170
Score = 1404 bits (760), Expect = 0.0
Identities = 1069/1210 (88%), Gaps = 53/1210 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAACGGCTTGATGag--a-aagaagaagaagaag---aacaagtacaagaagaag 54
|||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGGAACGGCTTGATGAGCAAGAAGAAGAAGAAGAAGAACAACAAGTACAAGAAGAAG 60
Query 55 agaCCAAAAGTGTCTAGAAATCGCGATTGCGATTGGTCCAACCTTCCACCCGATGTTCTG 114
|||||||| |||||||| || |||||||||||||||| || |||||||| |
Sbjct 61 AGACCAAACGTGTCTAG-AA-----ATTGCGATTGGTCCAAGTTTTGTTCCGATGTTTTA 114
Query 115 CGCAAGATTTTCGAAACCTTAAAGAGTCCAATTGATTCTCACCGAGCAAAAACCGTTTGC 174
|||||||||||||||||||||||||| || ||||||||||||| || |||||||
Sbjct 115 CGCAAGATTTTCGAAACCTTAAAGAGCCCTATTGATTCTCACC--GC-----GCGTTTGC 167
Query 175 TCGAATTGGTATTCAGTTTGGAAAACATGCGCGAACAAGCCTCCATGTCCATGGCGATTC 234
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TCGAATTAGTATTCAGTTTGGAAAACATGCGCGAACAAGCCTCCATGTCCATGGCGATTC 227
Query 235 ATACACCAA-G-GACTCTCAAAAACAACCTATTGTATGGCTAGCTCCGGAAACTGTCTCC 292
||||||||| | || | || | || | | |||||||||||||||||
Sbjct 228 ATACACCAAGGTGA-T-TC----TC--CC------A---C--CCTCCGGAAACTGTCTCC 268
Query 293 TGATGGTTGATCGTCGTCTCAAATTCTCTATTTTGAACATTTTGAC-AGGAGGAAGGATC 351
||||||| ||||||||||||||||||| |||||||||| ||||||| ||| || ||||
Sbjct 269 TGATGGTCGATCGTCGTCTCAAATTCTATATTTTGAACCTTTTGACGCGGA-CAACGATC 327
Query 352 AATCTTCCATCAATGGAGTTACAT-ATACGTGGAAGACAAGTAACCTTCAAACCTGAAAG 410
|||||||||||||| || || | ||||||||| |||||||| ||| |||||| |||
Sbjct 328 AATCTTCCATCAAT---GTCAC-TAATACGTGGAGGACAAGTATTCTTTAAACCTCAAA- 382
Query 411 A-GAATGGTCCGATGATTCTGGATGCTTCTTCGGGTCTTATCGTAATGATAATGTCTCGT 469
| ||||||||| ||||||||||||||||||||||| ||| |||||||| ||| || || |
Sbjct 383 ATGAATGGTCCAATGATTCTGGATGCTTCTTCGGGCCTTCTCGTAATGGTAACGTGTCAT 442
Query 470 ATGAATTTGATTCTGTCGAATGGAAAAACTCGGTAGCTGTTCTATGGATAAACGAGACAA 529
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 ATGACTTTGACTCTGTTGAATGGAAAAACTCGGTAGCTGTTCTATGGATAAACGAGACAA 502
Query 530 CAGGGGATTATGTCGTTGCTTGGACATTCATACAGCATTACTTGTTC-TCATACAAGAAA 588
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 503 CAGGAGATTATGTCGTTGCTTGGACATTCATACAGCATTACTTGTTCTTC-TACAAGTCA 561
Query 589 GGAGATTCTTCTTGGTGTAATCTAAATCACAATGGGAAAAGGTTGGTT-TCGTTTGATAT 647
||| ||| |||||||||||||| ||||| ||||||||||| |||||| | |||||||||
Sbjct 562 GGATATTGGTCTTGGTGTAATCTGAATCATAATGGGAAAAGTTTGGTTGT-GTTTGATAT 620
Query 648 GGCTTGTGAGAACAATAAGCTTTATCTTTACGCAGCTAATCATCACATAAGGATTTTTGA 707
||| ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||
Sbjct 621 GGCATGTGAGAACAATAAGCTTTATCTGTACACAGCTAATCATCATATCAGGATTTTTGA 680
Query 708 TTTCTCTGGAGTTTTTCCCATAGAAAAGAAAACCGAAAACCCGTATTCGAAATATCCGTT 767
||||||||||| || ||| || ||||||||||||||||||||||||| |||||||| |||
Sbjct 681 TTTCTCTGGAGCTTATCCTATGGAAAAGAAAACCGAAAACCCGTATTGGAAATATCTGTT 740
Query 768 TAACGCGGTTGAGGAACCGTGCGAATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATC 827
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 741 TAACGCGGTTGAGGAACCGTGGGAATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATC 800
Query 828 ATCAGGTGAGGTTTTGATCATCTTGAGCCTTAAACAAGTGTTTTGTGAAGAAGAGAAACT 887
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 801 ATCAGGTGAGGTTTTGATCATCTTGAGCCTTAAACAAGTGTTTTACGAAGCAGAGAGACT 860
Query 888 TTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGAGTTTATTCTAT 947
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 861 TTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTTCAAGTGGGAAAGAGTTTATTCTCT 920
Query 948 TGGAGATGAGATGTTGGTTTTTGGTCAAGGTGTTACAATAGCTACTGCTCTTAAAGATCT 1007
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 921 TGGAGATGAGATGTTGGTTTTTGGTCAAGGTGTTACAATACCTACTGCTCTTAAAGATCT 980
Query 1008 TGGTCATGGAATCAAGAGTGATTCAGTCTCTTTTATCGACACAGACGTCTGGCCAGATCA 1067
|||| |||||||||||||||||||| ||| ||| |||| | ||||||||||||||||||
Sbjct 981 TGGTGATGGAATCAAGAGTGATTCAATCTATTTCGTCGATAAAGACGTCTGGCCAGATCA 1040
Query 1068 TCAAGATCATGATCATCGTGTTTCGAGTTGCGGTGTCTTCCATATTACTACAAGTAAGAT 1127
|||||||||||||| ||||||||||| ||||||||||||| ||||| | |||||||||||
Sbjct 1041 TCAAGATCATGATCGTCGTGTTTCGAATTGCGGTGTCTTCAATATTGCCACAAGTAAGAT 1100
Query 1128 CGAATGGCCTAAGAAAATCTATTGTTCCATAAATGAAACTCAGTGGTATGTTCGGGGATT 1187
| ||||||||| ||||| ||| ||||| |||||||||||||||||| ||| | ||| |
Sbjct 1101 CAAATGGCCTACGAAAAAATATCGTTCCGTAAATGAAACTCAGTGGTTTGTGCTCGGAGT 1160
Query 1188 TGCTTATTAG 1197
||||||||||
Sbjct 1161 TGCTTATTAG 1170
> AT2G04810.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1688773-1689966 FORWARD LENGTH=1194
Length=1194
Score = 736 bits (398), Expect = 0.0
Identities = 787/963 (82%), Gaps = 73/963 (8%)
Strand=Plus/Plus
Query 261 CTATTGTATGGCTAGCTCCGGAAACTGTCTCCTGATGGTTGATCGTCGTCTCAAATTCTC 320
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 279 CTATTGTATGGCTAGCTCCGGAAACTGGCTCCTGATGGTTGATCGTTGTCTCAAATTCTA 338
Query 321 TATTT-TGAACATT-TTGACAGGAGG-AAGGATCAATCTTCCATCAATGGAGTTACATAT 377
||||| | ||| || ||||| | ||| ||||||| |||||||||| ||||||| | | ||
Sbjct 339 TATTTAT-AAC-TTGTTGAC-GAAGGAAAGGATCGATCTTCCATCGATGGAGTCAAAAAT 395
Query 378 ACGTGGAAGACAAGTAACCTTCAAACCTGAAAG--AGAATGGTCCGATGATTCTGGATGC 435
|||||| | ||||||| ||||||| || |||| | ||| | | | ||| ||||| |
Sbjct 396 ACGTGGCGGGCAAGTAAGCTTCAAATCTAAAAGCAACAAT--TAC-A--ATTTTGGATAC 450
Query 436 TTCTTCGGGTCTTATCGTAATGAT-A-AT-GT-CTCGTATGAATTTGATTCTGTCGAATG 491
|| ||||| ||| |||||| ||| | || || | ||||||| | ||| | || |||||
Sbjct 451 TTGGTCGGGCCTTCTCGTAAGGATGATATAGTGC-CGTATGACTATGAAGCCGTTGAATG 509
Query 492 GAAAAACTCGGTAGCTGTTCTATGGATAAACGAGACAACAGGGGATTATGTC-GTTGCTT 550
|||||| || |||||||||| ||| || ||||||||||||| ||||||| | |||||||
Sbjct 510 GAAAAAATCATTAGCTGTTCTGTGGGTAGACGAGACAACAGGAGATTATG-CAGTTGCTT 568
Query 551 GGACATTCATACAG-CATTACTTGTTCTCATACA-AGAAAGGAGATTCTTCTTGGTGTAA 608
|||| || || | | || |||||||||||||||| | |||||||||| ||||||||||||
Sbjct 569 GGACTTTTATGC-GACAATACTTGTTCTCATACATA-AAAGGAGATTATTCTTGGTGTAA 626
Query 609 TCTAAATCACAATGGGAAAAGGTTGGTTTCGTTTGATATGGCTTGTGAGAACAATAAGCT 668
||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 627 TCTGAATCATAATGGGAAAAGTTTGGTTTTGTTTGATATGGCTTGTGAGAACAATAAGCT 686
Query 669 TTATCTT-TACG-CAGCT-AATCATCACAT-AAGGATTTTTGATTTCTCTGGAG-TTTTT 723
|||| || | | || | |||||||||| || |||||| |||||| ||||| |||||
Sbjct 687 TTAT-TTGT-TGACA-ATGGATCATCACATCAA-GATTTTCAATTTCTATGGAGATTTTT 742
Query 724 CCCATAGAAAAGAAAACCGAAAACCCGTATTCGAAATATCCGTTTAAC-GCGGTTGAGGA 782
|| | | || || | |||| || | | |||||||||||| | ||||||||
Sbjct 743 ----TA-ACAGGAGAA-C-AAAA-CC----T-G---TATCCGTTTAACTTC-GTTGAGGA 785
Query 783 ACCGTGC-GAATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGTTT 841
|||| | |||||||||||||||||||| |||| ||||| | | |||||| |||||
Sbjct 786 TCCGT-CGGAATACGTTTGGAAGAGGAAGATAGTGATTC-G-GA-GATCAGGAGAGGTAC 841
Query 842 TGATCA-TCTTGAGCCTT--AAACAAGTGTTTTG-TGAA-GAAGAGAAACTTTTGTTTTA 896
|||| | ||||||| ||| ||| || | || || ||||||||||||||||||||
Sbjct 842 TGAT-AGTCTTGAG-CTTGAAAAAAAAAG---TGCAAAATGAAGAGAAACTTTTGTTTTA 896
Query 897 CATCTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGAGTTTATTCTATTGGAGATGA 956
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 897 CATCTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTGTATTGGAGATGA 956
Query 957 GATGTTGGTTTTTGGTCAAGGTGTTACAATAGCTACT-GCTCTTAAAGATCTTGGTCATG 1015
||||||| ||||||||| || |||||| ||| || |||||| ||||||||| | |||
Sbjct 957 GATGTTGATTTTTGGTCGTGGGGTTACA---GCT-CTTGCTCTTGAAGATCTTGATGATG 1012
Query 1016 GAATCAAGAGTGATTCAGTCTCTTTTATCGAC-ACAGACGTCTGGCCAGATCATCAAGAT 1074
| || |||||| ||||| ||| ||| ||| | | ||| || |||||||||||||||||
Sbjct 1013 GGATAAAGAGTAATTCAATCTATTTCGTCGGCGA-AGATGTTTGGCCAGATCATCAAGAA 1071
Query 1075 CATGATCATCGTGTTTCGAGTTGCGGTGTCTTCCATATTACTACAAGTAAGATCGAATGG 1134
||||| ||||||||||| | ||||||| ||||| ||||| | ||||||||||||||||||
Sbjct 1072 CATGAGCATCGTGTTTCAAATTGCGGTTTCTTCGATATTGCCACAAGTAAGATCGAATGG 1131
Query 1135 CCTAAGAAAATCTATTGTTCCATAAATGAAACTCAGTGGTATGTTCGGGGATTTGCTTAT 1194
||||||||||||||||||| ||| ||| ||| |||||||| |||| ||||| ||||||||
Sbjct 1132 CCTAAGAAAATCTATTGTTTCATTAATCAAAATCAGTGGTTTGTTGGGGGAGTTGCTTAT 1191
Query 1195 TAG 1197
|||
Sbjct 1192 TAG 1194
> AT2G04830.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1695355-1695856 FORWARD LENGTH=502
Length=502
Score = 350 bits (189), Expect = 2e-95
Identities = 288/334 (86%), Gaps = 14/334 (4%)
Strand=Plus/Plus
Query 877 GAAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGA 936
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 47 GAAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAAAGA 106
Query 937 GTTTATTCTATTGGAGATGAGATGTTGGTTTTTGGTCAAGGTGTTACAATAGCTACT-GC 995
||||| ||||||||||||||||||||| ||||||||| || |||||| || || || ||
Sbjct 107 GTTTACTCTATTGGAGATGAGATGTTGATTTTTGGTCGTGGGGTTACAGTACCT-CTCGC 165
Query 996 TCTTAAAGATCTTGGTCATGGAATCAAGAGTGATTCAGTCTCTTTTATCGAC-AC-A-GA 1052
|||||||||||||||||| |||||||||||||||||| ||| ||| ||||| || | ||
Sbjct 166 TCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATCTATTTCGTCGACGACGAAGA 225
Query 1053 CGTCTGGCCAGATCATCAAGAT---C-A--TGATCA---TCGTGTTTCGAGTTGCGGTGT 1103
|| |||||||||||| ||||| | | | || | || ||| |||| |||||||||
Sbjct 226 TGTTTGGCCAGATCATAAAGATTGGCCAGATTATAAAGATCATGTATCGAATTGCGGTGT 285
Query 1104 CTTCCATATTACTACAAGTAAGATCGAATGGCCTAAGAAAATCTATTGTTCCATAAATGA 1163
|||| ||||| | |||||||||||||||||||||||||| ||||||| |||| | ||| |
Sbjct 286 CTTCGATATTGCCACAAGTAAGATCGAATGGCCTAAGAAGATCTATTTTTCCGTTAATAA 345
Query 1164 AACTCAGTGGTATGTTCGGGGATTTGCTTATTAG 1197
||||||||||| |||| ||||| |||||||||||
Sbjct 346 AACTCAGTGGTTTGTTTGGGGAGTTGCTTATTAG 379
> AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252
FORWARD LENGTH=1221
Length=1221
Score = 182 bits (98), Expect = 9e-45
Identities = 417/562 (74%), Gaps = 57/562 (10%)
Strand=Plus/Plus
Query 504 AGCTGTTCTATGGATAAACGAGACAACAGGGGATTATGTCGTTGCTTGGACATTCATAC- 562
||||||||| |||||| |||||| |||||| |||| ||| |||||||||| || | ||
Sbjct 525 AGCTGTTCTGTGGATAGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTA-ACT 583
Query 563 AGCATTACTTGTTCTCATACAAGAAAGGAGATTCTTCTTGGTGTAATCTA-AATCACAAT 621
| | |||||||||||||||||||||||||||| ||| ||||| || || ||| || ||
Sbjct 584 ATCGTTACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAA-CTGGAATAACCAT 642
Query 622 GGGAAAA-GG-----TTGG-TTTC-GTTT---G-ATATGGCTTGTGAGAA-CAATAAGCT 668
|||| | || ||| ||| |||| | || |||||| |||| || |||||
Sbjct 643 TGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTAC-AGAAACAGCAAGCT 701
Query 669 TTATCTTTACGC-AGCTAATCA-TCACAT-AAGGATTTTTGATTTCTCTGGAGTTTTTCC 725
|||| | ||| | |||| | |||||| || | || |||||||||||||| | |||
Sbjct 702 TTATATCTACATTA-CTAAG-AGTCACATCAAAG-TTGTTGATTTCTCTGGAAATGATCC 758
Query 726 CATAGAAAAGAAAACCGA-AAA--CCCGTATTCGAAATATCCGTTTA-ACGCGGTTGAGG 781
||||||| | || | || ||| |||||||| | || |||||||| | | || |
Sbjct 759 CATAGAA--GTAATC-GATAAAAACCCGTATTGGGAACATCCGTTTCGATAC--TTAACC 813
Query 782 AACCGTGCG-AATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGTT 840
|| | | ||||| || ||||||| ||||||||||||||||||| || || |||
Sbjct 814 AAAAAAGGGGAATACATTAATAAGAGGAGAATAGCGATTCAGAAATCA---GGAGACGTT 870
Query 841 TTGATCATCTTGAGCCT-TAA--ACAAGTGTTTTGTGAAGAAGAGAAACTTTTGTTTTAC 897
||||| |||||||| | | | |||| | | || |||||||| |||| ||||||
Sbjct 871 TTGATTATCTTGAGTGTATTAGCACAAA-GATC----AA-AAGAGAAAGTTTTATTTTAC 924
Query 898 ATCTTTAAGATGAATCTTGAGAGTTGCA-AGTGGGAAAGAGTTTATTCTATTGGAGATGA 956
||||||||||||||||||| |||| | | ||||||||||| | ||||||||||||||
Sbjct 925 ATCTTTAAGATGAATCTTGCGAGTAAAATA-TGGGAAAGAGTAGAATCTATTGGAGATGA 983
Query 957 -GA--TGTTGGTTTTTGGTCAAGGTGTTACAATA-G--CTACTGCTCTTAAAGATCTTGG 1010
|| ||||| | |||||||| || ||||| ||| | | || | | | || ||| ||||
Sbjct 984 TGAGATGTTGATCTTTGGTCATGGGGTTACGATAAGAGC-ACCGGT-TCAA-GATGTTGG 1040
Query 1011 TCATGGAATCAAGAGTGATTCA 1032
| ||||||||||||||| ||||
Sbjct 1041 TGATGGAATCAAGAGTGGTTCA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5