BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480115
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04845.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1057 0.0
> AT2G04845.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:1702221-1704003 REVERSE LENGTH=787
Length=787
Score = 1057 bits (572), Expect = 0.0
Identities = 662/707 (94%), Gaps = 0/707 (0%)
Strand=Plus/Plus
Query 1 AGAAGAAGAATGGTGACAACAATGGCGATGAAGGTGACTTTAGAAGGGAAGAGAGTGGTT 60
||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||
Sbjct 2 AGAAGAAGAATGGTGACAAGAATGGCGACGAAGGTGAGTTTGGAAGGGAAGAGAGTGGTT 61
Query 61 TTGGTTCCGTACATGGCGGAACATGTTCCAAAGTACCATCAATGGATGCAAGACTCGGCG 120
||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 62 TTGGTACCGTACATGGCGGAACATGTACCAAAGTACCATCAATGGATGCAAGATTCGGCT 121
Query 121 CTTCTTGAAGCTACGGGATCTGAACCGTTGAGTCTTGAGCAAGAGTTTGAGATGCAGCTT 180
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 122 CTTCTTGAAGCTACGGGATCTGAGCCGTTGAGTCTTGAGCAAGAGTATGAGATGCAGCTT 181
Query 181 TCTTGGACTCAAGATCCCAATAAGCGGACTTTCATTGTGTTGGACAAGGATTTCATAAAG 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 182 TCTTGGACTCAAGATCCCAATAAGCGGACTTTCATTGTCTTGGACAAGGATTTCGTTAAG 241
Query 241 GGAGAGCTGATTCATGGCGAACCTCACGTAGAAGCCATGACGGGGGATGTGAATATATAC 300
||||| ||| ||||||| ||||||| |||||||| ||||| || |||||||| || |||
Sbjct 242 GGAGACCTGGCTCATGGCCAACCTCATGTAGAAGCAATGACAGGTGATGTGAACATTTAC 301
Query 301 ATGAATGATGTTGATGATCCAAAAGTTGCGGAGGTTGAAATAATGATAGCTGAGCCCAGA 360
||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 302 ATGAATGATGTGGATGATCCAAAGGTTGCAGAAGTTGAAATAATGATAGCTGAGCCCAGA 361
Query 361 AGCCGTGGTAAAGGACTAGGAAAGGAATCTGTGTTGATGATGATGGCTTATGGTGTCATG 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 362 AGCCGTGGTAAAGGACTAGGAAAGGAATCTGTGTTGATAATGATGGCTTATGGTGTCAAG 421
Query 421 AACTTAGAGATTCACAAGTTTACAGCCAAAATCGGGGAATCAAACACAGCTTCCCTCAGC 480
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 422 AACTTGGAGATTCACAAGTTTACAGCCAAAATTGGGGAATCAAACACAGCTTCCCTCAGC 481
Query 481 TTATTCCGCAAACTGGGTTTCGAGGACTCTTCTTACAGCGGTATATTCAAAGAGGTTACA 540
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 482 TTATTCCGCAAACTAGGTTTCGAGGAGTCTTCTTACAGCGGTATCTTCAAAGAGGTTACA 541
Query 541 CTCGAGTATATGGTGACTAATCTCCGTCGAGCAGAGCTCTTGAAGTTATTGGATGAAGTC 600
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 542 CTCGAGTATCCGGTGACTAATCTCCGTCGAGAAGAGCTCTTGAAGTTATTGGATGAAGTC 601
Query 601 ATTACGCACACTCATTCATCTAACAACCCATCAGACTCGCTGCTATCAGGAGAACCTATT 660
|||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| |
Sbjct 602 ATTAGGCACACTCATTCATCGAACAACCCATCAGACTCACTGCTATCAGGAGAAGCTACT 661
Query 661 GCATAAAGCATTTTATTCAGTGTTTATTGTTAGTTTACTCTTCAACT 707
|||||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 662 GCATAAAGCATTTTCTTCAGTGTTTATTGTTATTTTTCTCTTCAACT 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5