BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480117
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04850.1 | Symbols: | Auxin-responsive family protein | chr... 2148 0.0
AT2G04852.1 | Symbols: | Potential natural antisense gene, loc... 756 0.0
> AT2G04850.1 | Symbols: | Auxin-responsive family protein | chr2:1704283-1705778
FORWARD LENGTH=1400
Length=1400
Score = 2148 bits (1163), Expect = 0.0
Identities = 1325/1403 (94%), Gaps = 11/1403 (1%)
Strand=Plus/Plus
Query 1 AGAGATGATCAAACAATGGCGACTTTGATTCTAACATTCTTG--T-TTCTTCTAGCAACA 57
||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1 AGAGATGATCAAACAATGGCGACTTTGATTCTATCATTCTTGCTTCTTCTTCTAGCAACA 60
Query 58 AAGCTTCCCAG-CTCTCTCGCGGGGCACTGCACCACCACGACGGCAACGAAAAGCTTCGA 116
|||||| || | || || || || |||||||||||||||||||| ||||||||||||||
Sbjct 61 AAGCTT-CCTGAATCACTAGCTGGTCACTGCACCACCACGACGGCGACGAAAAGCTTCGA 119
Query 117 GAAATGCATCTCTCTTCCGACACAACAAGCGTCAATCGCGTGGACATACCATCCACACAA 176
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAATGTATCTCTCTTCCAACACAACAAGCGTCAATCGCGTGGACATACCATCCACACAA 179
Query 177 CGGTACTCTCGACCTTTGTTTCTTTGGAACTTTCATCTCACCTTCCGGGTGGGTTGGATG 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGCTACTCTCGACCTTTGTTTCTTTGGAACTTTCATCTCACCTTCCGGGTGGGTTGGATG 239
Query 237 GGGGATTAACCCGGATTCTCCGGCACAGATGACTGGCTCTCGTGTCCTGATCGCCTTTCC 296
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 240 GGGGATTAACCCGGATTCCCCGGCGCAGATGACTGGTTCTCGTGTCCTCATCGCCTTTCC 299
Query 297 GGATCCAAATTCTGGTCAGCTCATTCTCCTTCCTTACGTTCTTGACTCTTCAGTCAAGCT 356
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AGATCCGAATTCTGGTCAGCTCATCCTCCTTCCTTACGTTCTTGACTCTTCAGTCAAGCT 359
Query 357 TCAGAAAGGTCCTCTGCTTTCCCGTCCACTTGACCTTGTCCGTCTCTCTTCCTCTTCTGC 416
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 360 TCAGAAAGGTCCTCTGCTTTCCCGTCCGCTTGACCTTGTCCGTCTCTCTTCCTCCTCTGC 419
Query 417 TTCTCTCTACGGTGGTAAAATGGCCACTATCCGTAATGGTGCTTCCGTTCAGATTTATGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCTCTCTACGGTGGTAAAATGGCCACTATCCGTAATGGTGCTTCCGTTCAGATTTATGC 479
Query 477 ATCCGTTAAGCTCTCGTCGAACAATACCAAGATCCATCATGTTTGGAACAGAGGTCTTTA 536
|| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 480 CTCTGTTAAGCTCTCCTCGAACAATACTAAGATCCACCATGTTTGGAACAGAGGTCTTTA 539
Query 537 TGTCCAAGGTTACTCTCCTACCATTCATCCCACCACTTCCACCGATCTCTCCTCCTTCTC 596
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 540 TGTCCAAGGTTACTCTCCCACCATTCATCCTACTACTTCCACCGATCTCTCCTCCTTCTC 599
Query 597 CACATTCGATGTCACTTCAGGATTTGCAACAGTTAATCGAAACAGCGGTTCCAGAGCTTT 656
||| || ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 600 CACCTTTGATGTCACTTCAGGATTTGCAACTGTTAATCAAAACAGCGGTTCCCGAGCTTT 659
Query 657 AAAAGTGACTCACGGAGTAATCAACGCGATAGCGTGGGGTTTTCTCCTCCCGGCAGGAGC 716
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct 660 AAAAGTGACTCACGGAGTAGTCAACGCGATATCGTGGGGTTTTCTCCTCCCGGCGGGAGC 719
Query 717 AGTAACAGCTCGATACCTCCGCCAAATGCAATCAATAGGACCCACTTGGTTCTACATTCA 776
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 AGTAACAGCTAGATACCTCCGCCAAATGCAATCAATAGGACCCACTTGGTTCTACATCCA 779
Query 777 CGCAGCAATACAGCTAACCGGTTTCCTCTTAGGAACCATTGGCTTCTCCATTGGAATAGT 836
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 780 CGCAGCAATACAGCTAACCGGTTTCCTCCTAGGAACCATTGGCTTCTCCATTGGAATCGT 839
Query 837 GCTCGGCCATAATTCCCCTGGCGTGACTTACGGGTTACATCGAAGCCTTGGGATAGCTAC 896
||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||
Sbjct 840 GCTCGGCCATAATTCCCCTGGAGTGACCTATGGGTTACATCGGAGCCTCGGGATAGCTAC 899
Query 897 GTTCACAGCAGCGGCGCTGCAAACACTGGCTCTGCTGTTCAGACCAAAGACGACCAACAA 956
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 900 TTTCACAGCAGCGGCGCTGCAAACACTGGCTTTGCTGTTCAGACCAAAGACGACCAATAA 959
Query 957 GTTTCGGAGATACTGGAAGTCTTACCATCATTTTGTCGGGTACGCGTGTGTGGTAATGGG 1016
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 GTTCCGGAGGTACTGGAAGTCTTACCATCATTTTGTCGGGTACGCGTGTGTGGTGATGGG 1019
Query 1017 TGTGGTGAATGTGTTCCAAGGGTTTGAGGTTTTAAGGGAAGGAAGGTCATATGCGAAGCT 1076
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1020 CGTGGTGAATGTGTTCCAAGGGTTTGAGGTTTTAAGGGAAGGAAGGTCGTACGCAAAGCT 1079
Query 1077 TGGTTACTGTCTATGTCTGTCGACGCTGGTTGGTGTCTGCGTGGCCATGGAAGTTAACTC 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CGGTTACTGTCTATGTCTGTCGACGCTGGTTGGTGTCTGCGTGGCCATGGAAGTTAACTC 1139
Query 1137 GTGGGTTGTTTTTTGTCGAAAGGCTAAAGAGGAGAAGATGAAGAGAGATGGTTTGACCGG 1196
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTGGGTTGTGTTTTGTCGAAAGGCTAAAGAGGAGAAGATGAAGAGAGATGGTTTGACCGG 1199
Query 1197 TGACGATAGATGCAGTGGGAGTCATAGTTAGGTCTTGTGTCCTAATTATAAGACAAAGAG 1256
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 1200 TGTCGATAGATGCAGTGGGAGTCATAGTTAGGTCTTGGGTCCTAATTATAAGACAGA-A- 1257
Query 1257 AAAGAGACACGAGATCATCTATATATCTTTGCTTAGTACCCTCATGTACAATGTA-CATT 1315
|||||||||| | ||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 1258 AAAGAGACACAATATCATTTATATATCTTTGCTTAGTACCCTCATGTACAATGTAAC-TT 1316
Query 1316 GTTGGTTCAAAGTTGACTTACCTAAAGCTT-TGGATCCATCAGTTGCATCATACGGAGAG 1374
||||||||||||||||||||||||||| || ||||||||||| |||||||||| | ||||
Sbjct 1317 GTTGGTTCAAAGTTGACTTACCTAAAG-TTGTGGATCCATCATTTGCATCATATGTAGAG 1375
Query 1375 CTCAGATGAAGGAGATATCAGCC 1397
|||||| ||||||||||||||||
Sbjct 1376 CTCAGACGAAGGAGATATCAGCC 1398
> AT2G04852.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT2G04850 | chr2:1705148-1706465 REVERSE
LENGTH=600
Length=600
Score = 756 bits (409), Expect = 0.0
Identities = 453/475 (95%), Gaps = 0/475 (0%)
Strand=Plus/Minus
Query 767 TCTACATTCACGCAGCAATACAGCTAACCGGTTTCCTCTTAGGAACCATTGGCTTCTCCA 826
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 TCTACATCCACGCAGCAATACAGCTAACCGGTTTCCTCCTAGGAACCATTGGCTTCTCCA 541
Query 827 TTGGAATAGTGCTCGGCCATAATTCCCCTGGCGTGACTTACGGGTTACATCGAAGCCTTG 886
||||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||| |
Sbjct 540 TTGGAATCGTGCTCGGCCATAATTCCCCTGGAGTGACCTATGGGTTACATCGGAGCCTCG 481
Query 887 GGATAGCTACGTTCACAGCAGCGGCGCTGCAAACACTGGCTCTGCTGTTCAGACCAAAGA 946
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 GGATAGCTACTTTCACAGCAGCGGCGCTGCAAACACTGGCTTTGCTGTTCAGACCAAAGA 421
Query 947 CGACCAACAAGTTTCGGAGATACTGGAAGTCTTACCATCATTTTGTCGGGTACGCGTGTG 1006
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGACCAATAAGTTCCGGAGGTACTGGAAGTCTTACCATCATTTTGTCGGGTACGCGTGTG 361
Query 1007 TGGTAATGGGTGTGGTGAATGTGTTCCAAGGGTTTGAGGTTTTAAGGGAAGGAAGGTCAT 1066
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 TGGTGATGGGCGTGGTGAATGTGTTCCAAGGGTTTGAGGTTTTAAGGGAAGGAAGGTCGT 301
Query 1067 ATGCGAAGCTTGGTTACTGTCTATGTCTGTCGACGCTGGTTGGTGTCTGCGTGGCCATGG 1126
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGCAAAGCTCGGTTACTGTCTATGTCTGTCGACGCTGGTTGGTGTCTGCGTGGCCATGG 241
Query 1127 AAGTTAACTCGTGGGTTGTTTTTTGTCGAAAGGCTAAAGAGGAGAAGATGAAGAGAGATG 1186
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGTTAACTCGTGGGTTGTGTTTTGTCGAAAGGCTAAAGAGGAGAAGATGAAGAGAGATG 181
Query 1187 GTTTGACCGGTGACGATAGATGCAGTGGGAGTCATAGTTAGGTCTTGTGTCCTAA 1241
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GTTTGACCGGTGTCGATAGATGCAGTGGGAGTCATAGTTAGGTCTTGGGTCCTAA 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5