BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480126
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04920.1 | Symbols: | F-box and associated interaction doma... 1253 0.0
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 305 4e-82
> AT2G04920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:1726138-1727268 FORWARD LENGTH=1131
Length=1131
Score = 1253 bits (678), Expect = 0.0
Identities = 879/975 (90%), Gaps = 18/975 (2%)
Strand=Plus/Plus
Query 1 ATGTCCGATCTTCCACCGGATTTGGTAGAAGAAATACTCTCAAGGATCCCAGCCACATCT 60
||||| |||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||
Sbjct 1 ATGTCTGATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCT 60
Query 61 CTGAAACGATTACGATCCACTTGCAAACAATGGAACTCTTTATTCAAGAACCGAAGATTC 120
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATTC 120
Query 121 ACCGAGAAGCACTTTCGTGAAGCTCCAAAGCAGTCTCATGCTCTGTTATGGAACGATCGT 180
|| |||||||||||| || ||||||||||||||||||||| ||| |||||||| ||| |
Sbjct 121 ACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCATGTTCTCTTATGGAAGGATTAT 180
Query 181 AGGGTTTGTCCAATGAGCATCAATCTCAACGTTGCTCCTCCATCTATAGAGTTTAAGAGT 240
| |||||||||||||||||||||||||||| || || | | ||||||||||||||||||
Sbjct 181 ACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGAGT 240
Query 241 GTACTTAGTATTAAGGA--C-C---------CAGAACCCGTCTATATATCCAATGTTTCT 288
|||||||| | ||||| | | |||||| ||||||||| |||| |||| |
Sbjct 241 GTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTTTTT 300
Query 289 CACTGCGACGGTTTATTGTTATGCACCACCGATGATGGTAGACTCGTAGTTTGGAATCCG 348
|||||||| ||||| ||||||||||||||| | ||| ||||||| ||||||||||||||
Sbjct 301 CACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAATCCG 360
Query 349 TGTTTGGGGCAAACCAGGTGGATCAACTTTGAAAATGATTACAAGACATACTATAGGTTT 408
||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||
Sbjct 361 TGTTTGGGGGAAACCAGGTGGATCAACTTTGAAAATGATTACAAGCCATATTCTAGGTTT 420
Query 409 GCTCTAGGATACAAAAATAACAAATCTTGCCGTAGCTACAAACTCTTGAGGTTTTGGACA 468
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 421 TCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTTTTGGACA 480
Query 469 TCTTATTTTACACCAAACCATATTGGTCT-CGTGTATAATATCTATGAGTTTACCTCTGA 527
|||||||| ||||||||||||||||| || | |||||||||||||||||||||| ||||
Sbjct 481 TCTTATTTGACACCAAACCATATTGGCCTAAG-GTATAATATCTATGAGTTTACCACTGA 539
Query 528 TTCGTGGAGGGTTCTTCTTGATAAAGTCTCTCTCAACTACTTTCTAATAGAATCAGAGAA 587
||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 TTCATGGAGGGTTCTTATTGATAAAGTCTCTCTCAACTACTTTCTCATAGAATCAGAGAA 599
Query 588 TGGTGTGTCTATCAAGGGAAATACTTATTGGCTTGCTTTAGATGTCGAAACAAATTTGTT 647
|||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 600 TGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTTTAGATGAAGAAACAAATTTCTT 659
Query 648 ACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGTA 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 ACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGAA 719
Query 708 TGGTGATACGATGGTTCTATCTGTTGTTAGAGAAGAAAAACTCTTAGTGTCACATCAGAA 767
| ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 720 TTGTGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACTCTCAGTATCACATCAGAA 779
Query 768 CTTTCGTTCATCAAAGATGGATATTTGGATGACCAATATAATTGATAGTGAAACCGCCTT 827
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 780 CTTTTGTTCATCAAAGATGGATATTTGGATGACCAATAGAATTGATAGTGAAACCGCCAT 839
Query 828 GTCCTGGAAGAAGTACTTTTCTGTGGAGTTTATAATCCTTAGTACT-TGTCATTCTTGT- 885
||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||| |
Sbjct 840 GTCCTGGAAGAGGTACTTTTCTGTGGAGTTTAAAATCCTTAGTA-TGTGTCATTCTT-TA 897
Query 886 CCGTTTAGCATTACTTTTCTGATCGATGAGGAGAAGAAAGTTGTCGTATCGATTGTAATG 945
|||||| ||| || |||||||||||||||||| |||||| ||||| |||||| ||||| |
Sbjct 898 CCGTTTTGCAATAGTTTTCTGATCGATGAGGAAAAGAAAATTGTCATATCGACTGTAAGG 957
Query 946 GATAATGAGAATATG 960
| ||||||||| |||
Sbjct 958 GGTAATGAGAACATG 972
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 305 bits (165), Expect = 4e-82
Identities = 392/495 (79%), Gaps = 42/495 (8%)
Strand=Plus/Plus
Query 1 ATGTCCGATCTTCCACCGGATTTGGTAGAAGAAATACTCTCAAGGATCCCAGCCACATCT 60
||||| |||||||| |||||||||||||||||||||||||||| | | |||||||||
Sbjct 1 ATGTCTGATCTTCCTTTGGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCT 60
Query 61 CTGAAACGATTACGATCCACTTGCAAACAATGGAACTCTTTATTCAAGAACCGAAGATTC 120
||||||||||||||||| |||||||||||||||||| |||||||||| || ||||| |||
Sbjct 61 CTGAAACGATTACGATCTACTTGCAAACAATGGAACACTTTATTCAAAAAACGAAGTTTC 120
Query 121 A-CCGAGAAGCACTTTCGTGA-AGCTCCAAAGCAGTCTCATGCTCTGTTATG--GAACGA 176
| || |||| ||||||| | | |||||||||| ||||| ||| | | | ||| ||| ||
Sbjct 121 AGCC-AGAAACACTTTCAT-ATAGCTCCAAAGGAGTCT-ATGGT-TCTCATGTTGAAGGA 176
Query 177 TCGTAG-G-GTTTG-TCCAATGAGCATCAATCTCAACGTTGCTCCTCCATCTATAGAGTT 233
||| | ||||| || ||||| ||||||||||| ||| ||||||||||| |||||||
Sbjct 177 --GTACAGAGTTTGCTC-AATGAATATCAATCTCAATGTTTCTCCTCCATCTGTAGAGTT 233
Query 234 T-AAGAGTGTACTTAGTATTAA-G--GA--CCCAG---AACC-----C--GTCTATATA- 276
| ||| || |||| | || || | || |||| || | ||| | |||
Sbjct 234 TCAAG-GTACACTTGGCATAAAAGATGATTCCCATTCTAATTTAGGACAAGTCGAGATAG 292
Query 277 TCCAATGTTTCTCACTGCGACGGTTTATTGTTATGCACCACCGATG-ATGGTAGACTCGT 335
|| || |||| |||||| || ||||| ||||||||| ||||| | | | |||||||||
Sbjct 293 TCGAA-GTTTATCACTGTGATGGTTTGTTGTTATGCGCCACC-AGGGACAATAGACTCGT 350
Query 336 AGTTTGGAATCCGTGTTTGGGGCAAACCAGGTGGATC-AACTTTGAAA-ATGATTACAAG 393
||||||||||||||||||||| |||||||||||||| |||| ||| |||| | || |
Sbjct 351 GGTTTGGAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACTC--AAAGATGAATGCAGG 408
Query 394 ACATACTATAGGTTTGCTCTAGGATACAAAAATAACAAATCTTG-C--CGTAGCTACAAA 450
| ||||| || |||||||||||||||| |||| ||||||| ||| | |||| |||||||
Sbjct 409 AGATACTCTACGTTTGCTCTAGGATACGAAAACAACAAATTTTGTCGTCGTAACTACAAA 468
Query 451 CTCTTGAGGTTTTGG 465
||||||||| ||||
Sbjct 469 ATCTTGAGGTATTGG 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5