BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480126 Length=994 Score E Sequences producing significant alignments: (Bits) Value AT2G04920.1 | Symbols: | F-box and associated interaction doma... 1253 0.0 AT3G22350.1 | Symbols: | F-box and associated interaction doma... 305 4e-82 > AT2G04920.1 | Symbols: | F-box and associated interaction domains-containing protein | chr2:1726138-1727268 FORWARD LENGTH=1131 Length=1131 Score = 1253 bits (678), Expect = 0.0 Identities = 879/975 (90%), Gaps = 18/975 (2%) Strand=Plus/Plus Query 1 ATGTCCGATCTTCCACCGGATTTGGTAGAAGAAATACTCTCAAGGATCCCAGCCACATCT 60 ||||| |||||||||||||||||||| ||||| |||||||| ||| |||||||||||||| Sbjct 1 ATGTCTGATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCT 60 Query 61 CTGAAACGATTACGATCCACTTGCAAACAATGGAACTCTTTATTCAAGAACCGAAGATTC 120 |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 CTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATTC 120 Query 121 ACCGAGAAGCACTTTCGTGAAGCTCCAAAGCAGTCTCATGCTCTGTTATGGAACGATCGT 180 || |||||||||||| || ||||||||||||||||||||| ||| |||||||| ||| | Sbjct 121 ACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCATGTTCTCTTATGGAAGGATTAT 180 Query 181 AGGGTTTGTCCAATGAGCATCAATCTCAACGTTGCTCCTCCATCTATAGAGTTTAAGAGT 240 | |||||||||||||||||||||||||||| || || | | |||||||||||||||||| Sbjct 181 ACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGAGT 240 Query 241 GTACTTAGTATTAAGGA--C-C---------CAGAACCCGTCTATATATCCAATGTTTCT 288 |||||||| | ||||| | | |||||| ||||||||| |||| |||| | Sbjct 241 GTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTTTTT 300 Query 289 CACTGCGACGGTTTATTGTTATGCACCACCGATGATGGTAGACTCGTAGTTTGGAATCCG 348 |||||||| ||||| ||||||||||||||| | ||| ||||||| |||||||||||||| Sbjct 301 CACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAATCCG 360 Query 349 TGTTTGGGGCAAACCAGGTGGATCAACTTTGAAAATGATTACAAGACATACTATAGGTTT 408 ||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| Sbjct 361 TGTTTGGGGGAAACCAGGTGGATCAACTTTGAAAATGATTACAAGCCATATTCTAGGTTT 420 Query 409 GCTCTAGGATACAAAAATAACAAATCTTGCCGTAGCTACAAACTCTTGAGGTTTTGGACA 468 ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 421 TCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTTTTGGACA 480 Query 469 TCTTATTTTACACCAAACCATATTGGTCT-CGTGTATAATATCTATGAGTTTACCTCTGA 527 |||||||| ||||||||||||||||| || | |||||||||||||||||||||| |||| Sbjct 481 TCTTATTTGACACCAAACCATATTGGCCTAAG-GTATAATATCTATGAGTTTACCACTGA 539 Query 528 TTCGTGGAGGGTTCTTCTTGATAAAGTCTCTCTCAACTACTTTCTAATAGAATCAGAGAA 587 ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 TTCATGGAGGGTTCTTATTGATAAAGTCTCTCTCAACTACTTTCTCATAGAATCAGAGAA 599 Query 588 TGGTGTGTCTATCAAGGGAAATACTTATTGGCTTGCTTTAGATGTCGAAACAAATTTGTT 647 |||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| || Sbjct 600 TGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTTTAGATGAAGAAACAAATTTCTT 659 Query 648 ACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGTA 707 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 660 ACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGAA 719 Query 708 TGGTGATACGATGGTTCTATCTGTTGTTAGAGAAGAAAAACTCTTAGTGTCACATCAGAA 767 | ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 720 TTGTGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACTCTCAGTATCACATCAGAA 779 Query 768 CTTTCGTTCATCAAAGATGGATATTTGGATGACCAATATAATTGATAGTGAAACCGCCTT 827 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 780 CTTTTGTTCATCAAAGATGGATATTTGGATGACCAATAGAATTGATAGTGAAACCGCCAT 839 Query 828 GTCCTGGAAGAAGTACTTTTCTGTGGAGTTTATAATCCTTAGTACT-TGTCATTCTTGT- 885 ||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||| | Sbjct 840 GTCCTGGAAGAGGTACTTTTCTGTGGAGTTTAAAATCCTTAGTA-TGTGTCATTCTT-TA 897 Query 886 CCGTTTAGCATTACTTTTCTGATCGATGAGGAGAAGAAAGTTGTCGTATCGATTGTAATG 945 |||||| ||| || |||||||||||||||||| |||||| ||||| |||||| ||||| | Sbjct 898 CCGTTTTGCAATAGTTTTCTGATCGATGAGGAAAAGAAAATTGTCATATCGACTGTAAGG 957 Query 946 GATAATGAGAATATG 960 | ||||||||| ||| Sbjct 958 GGTAATGAGAACATG 972 > AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:7901905-7903041 FORWARD LENGTH=1137 Length=1137 Score = 305 bits (165), Expect = 4e-82 Identities = 392/495 (79%), Gaps = 42/495 (8%) Strand=Plus/Plus Query 1 ATGTCCGATCTTCCACCGGATTTGGTAGAAGAAATACTCTCAAGGATCCCAGCCACATCT 60 ||||| |||||||| |||||||||||||||||||||||||||| | | ||||||||| Sbjct 1 ATGTCTGATCTTCCTTTGGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCT 60 Query 61 CTGAAACGATTACGATCCACTTGCAAACAATGGAACTCTTTATTCAAGAACCGAAGATTC 120 ||||||||||||||||| |||||||||||||||||| |||||||||| || ||||| ||| Sbjct 61 CTGAAACGATTACGATCTACTTGCAAACAATGGAACACTTTATTCAAAAAACGAAGTTTC 120 Query 121 A-CCGAGAAGCACTTTCGTGA-AGCTCCAAAGCAGTCTCATGCTCTGTTATG--GAACGA 176 | || |||| ||||||| | | |||||||||| ||||| ||| | | | ||| ||| || Sbjct 121 AGCC-AGAAACACTTTCAT-ATAGCTCCAAAGGAGTCT-ATGGT-TCTCATGTTGAAGGA 176 Query 177 TCGTAG-G-GTTTG-TCCAATGAGCATCAATCTCAACGTTGCTCCTCCATCTATAGAGTT 233 ||| | ||||| || ||||| ||||||||||| ||| ||||||||||| ||||||| Sbjct 177 --GTACAGAGTTTGCTC-AATGAATATCAATCTCAATGTTTCTCCTCCATCTGTAGAGTT 233 Query 234 T-AAGAGTGTACTTAGTATTAA-G--GA--CCCAG---AACC-----C--GTCTATATA- 276 | ||| || |||| | || || | || |||| || | ||| | ||| Sbjct 234 TCAAG-GTACACTTGGCATAAAAGATGATTCCCATTCTAATTTAGGACAAGTCGAGATAG 292 Query 277 TCCAATGTTTCTCACTGCGACGGTTTATTGTTATGCACCACCGATG-ATGGTAGACTCGT 335 || || |||| |||||| || ||||| ||||||||| ||||| | | | ||||||||| Sbjct 293 TCGAA-GTTTATCACTGTGATGGTTTGTTGTTATGCGCCACC-AGGGACAATAGACTCGT 350 Query 336 AGTTTGGAATCCGTGTTTGGGGCAAACCAGGTGGATC-AACTTTGAAA-ATGATTACAAG 393 ||||||||||||||||||||| |||||||||||||| |||| ||| |||| | || | Sbjct 351 GGTTTGGAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACTC--AAAGATGAATGCAGG 408 Query 394 ACATACTATAGGTTTGCTCTAGGATACAAAAATAACAAATCTTG-C--CGTAGCTACAAA 450 | ||||| || |||||||||||||||| |||| ||||||| ||| | |||| ||||||| Sbjct 409 AGATACTCTACGTTTGCTCTAGGATACGAAAACAACAAATTTTGTCGTCGTAACTACAAA 468 Query 451 CTCTTGAGGTTTTGG 465 ||||||||| |||| Sbjct 469 ATCTTGAGGTATTGG 483 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48676888443 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5