BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480128
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05060.1 | Symbols: | Protein kinase superfamily protein | ... 1175 0.0
AT2G34290.1 | Symbols: | Protein kinase superfamily protein | ... 361 8e-99
AT2G41920.1 | Symbols: | Protein kinase superfamily protein | ... 322 4e-87
> AT2G05060.1 | Symbols: | Protein kinase superfamily protein
| chr2:1798155-1799102 FORWARD LENGTH=948
Length=948
Score = 1175 bits (636), Expect = 0.0
Identities = 854/954 (90%), Gaps = 36/954 (4%)
Strand=Plus/Plus
Query 1 ATGAGAATTGATCTGTCTGTTCCAAAGTTGAGGGCAGAGTTAGAACTCAACAAGGTTCTC 60
|||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 ATGAGAATTGATCTTTCTGTTCCAAAGGTGGGGGCAGAGTTAGAACTCAACAAGGTTCTC 60
Query 61 GGAAAAGGTTCGTCCGGTTCGGTGAGTCTCATCAAGTACAATG-GACGCCGCGACGGCGA 119
|||||||||||||| |||||||||||||||||||||||||| | | || | ||||||| |
Sbjct 61 GGAAAAGGTTCGTCTGGTTCGGTGAGTCTCATCAAGTACAA-GAGTCGACTCGACGGCCA 119
Query 120 AACGCTTTACGCCGCCGTGAAAACCTCCAACATCATTCACGCTGACACTCT-CTACAAAG 178
||| ||||||||||| ||||||||||||||||| |||||||| ||| |||| || |||||
Sbjct 120 AACACTTTACGCCGCGGTGAAAACCTCCAACATAATTCACGCCGACTCTCTCCT-CAAAG 178
Query 179 AGTTTCAGATCTTGTCCGAATTCAAAGGATGTTCAAGAATCGTCCAATGCTATGGGACCA 238
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 179 AGTTTCAGATCTTGTCCGAATTCAAAGGCTGTTCGAGAATCGTCCAATGCTATGGGACAA 238
Query 239 AAGTAGAAGAGAGAATCACCGACGACGGTGACGTAGAGTTCAAGATTCACATGGAGTACG 298
||||| |||||| ||||| ||| || |||||||||||||||| ||||| |||||| || |
Sbjct 239 AAGTACAAGAGACAATCAACGAAGAAGGTGACGTAGAGTTCACGATTCCCATGGAATATG 298
Query 299 CATCTGGAGGAAGCTTGAGAAATTTTATGAGCAGATTCAAGGAAATGAAATTGCCTGATC 358
|||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 299 CATCTGGAGGAAGCTTGAGACATTTTATGAGTAGATTCAAGGACATGAAATTGCCTGATG 358
Query 359 CTTTGATCAGAAGGTTTACGCGTATGATTCTTGAGGGTTTAGCAGTTATTCATGGACACG 418
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 359 CTTTGATCAGAAGGTTTACGCGTATGATCCTCGAGGGTTTAGCAGTTATTCATGGACACG 418
Query 419 GCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTCGTTTTCCCGAGTTTCGAGTTAA 478
| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 GTTATGTTCACTGCGATCTAAAACCCGAAAACATCCTTGTTTTCCCGAGTTTCGAGTTAA 478
Query 479 AGATTTCTGATTTCGGGTTGTCCAAAAGAGAGGGAGATAACAACTGGTGGCTTCCTAGTC 538
|||||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||
Sbjct 479 AGATTTCTGATTTCGGGTTGTCTAAAAGAGAAGGAGATAGTAAATGGTGGCTTCCTAGTC 538
Query 539 ATCCTTTTGCGGGAACACCGATATATATGTCGCCGGAATCCATTTCT-ACGGGCGAGACA 597
|||| ||||||||||||||| ||||||||||||| ||||| |||||| || ||||| |||
Sbjct 539 ATCCGTTTGCGGGAACACCGGTATATATGTCGCCTGAATCGATTTCTAAC-GGCGAAACA 597
Query 598 AGGAGAGGTTTGG----A---T--TT---ATG-GT--CGTT--AG--G---A-T-G---T 630
||||||||||||| | | || ||| || ||| || | | | |
Sbjct 598 AGGAGAGGTTTGGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAAAG 657
Query 631 AGACCATGGTGGGATAAAAACTATGACTTGGAAGATCTCAAGAAAGGTTACATGCCATTG 690
||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||
Sbjct 658 AGACCATGGTGGGATAAGAACTATGACTTGGGAGATCTTAAGAAAGGTTCCATGCCATTG 717
Query 691 ATTCCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGAGTTGTTTTGCGGCGGAG 750
||| ||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||
Sbjct 718 ATTTCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGACTTGCTTCGCGTCGGAG 777
Query 751 ACTGACAAGAGAAAAAACGCTTTCACATTGTTGAGGCATTGCTTCTTGCGTGGAGATGTT 810
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 ACTAACAAGAGAAAAAACGCTTTCACATTGTTGAGGCATTGCTTCTTGCGTGGGGATGTT 837
Query 811 AATAAGATCATAGAGCCTCTCGTGATGAAGAATGAGAATTCTAATGATATAGCACTAGAG 870
||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||
Sbjct 838 AATAAGATCATAGAGCCTCTCGTGAAGA-GTA--AGAATTCTAATGATATAGCACTAGAG 894
Query 871 TTGGAGAAAATTGAGCTCAGGTTTTCGCAACTTAGGTGTATTAGTGGTGAATAG 924
|||||||| ||||| | |||| ||||||||||||||||||||||||||| ||||
Sbjct 895 TTGGAGAATATTGAACACAGGCTTTCGCAACTTAGGTGTATTAGTGGTGGATAG 948
> AT2G34290.1 | Symbols: | Protein kinase superfamily protein
| chr2:14472633-14473430 REVERSE LENGTH=798
Length=798
Score = 361 bits (195), Expect = 8e-99
Identities = 474/603 (79%), Gaps = 41/603 (7%)
Strand=Plus/Plus
Query 52 AAGGT-TCTCGGAAAAGGTTCGTCCGGTTCGGTGAGTCTCATCAAG-TACAATGGACGCC 109
||||| ||| || ||||||||| || |||||||| || || || || || ||||
Sbjct 12 AAGGTATCTGGGGGAAGGTTCGTTTGGATCGGTGAGCCTTTTC-AGTTATAAAAGACGAT 70
Query 110 GCGACGGCGAAACGCTTTACGCCGCCGTGAAAACCTCCAACATCATTCACGCTGACACTC 169
|||||| || || || |||||||||||||||||||| || | | ||| | |||
Sbjct 71 GCGACGTTGAGACTCTCTACGCCGCCGTGAAAACCTCTGAC--GA-T---GCTAAGTCTC 124
Query 170 TCTACAAAGAGTTTCAGA-TCTTGTCCGAATTCAAAGGATGTTCAAGAATCGTCCAATGC 228
||||| |||||||||||| || |||| ||||||| || || || |||||||||||||||
Sbjct 125 TCTACGAAGAGTTTCAGATTC-TGTCTAAATTCAAGGGTTGCTCGAGAATCGTCCAATGC 183
Query 229 TATGGGACCAAAGTAGAAGAGAGAATCACCGACGACGGTGACGTAGAGTTCAAGATTCAC 288
|| || | | ||||||| ||||| | | |||| | ||| ||||||||| || ||||| |
Sbjct 184 TACGGTAGCGGAGTAGAACAGAGACTTAACGACAAGGGTTACGTAGAGTACACGATTC-C 242
Query 289 -ATGGAGTACGCATCTGGAGGAAGCTTGAGAAATTTTAT-GAGCAGATTCAAGGA-AATG 345
|||||||||||| | |||||||||||||| |||| || || | ||||||| || ||
Sbjct 243 TATGGAGTACGCAGCCGGAGGAAGCTTGAGCGATTTCATGGA-CCGATTCAACGACAA-A 300
Query 346 AAATTGCCTGATCCTTTGATCAGAAGGTTTACGCGTATGATTCTTGAGGGTTTAG-CAGT 404
|||||||||||||| ||||||||| |||||| |||||| |||| |||||||||| ||
Sbjct 301 AAATTGCCTGATCCGATGATCAGAAAGTTTACTCGTATGCTTCTCGAGGGTTTAGCCA-C 359
Query 405 TATTCATGGACACGGCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTCGTTTTCCC 464
||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 360 AATTCACAGACACGGCTATGTTCACTGCGATCTCAAACCCGAGAACATCCTTGTTTTCCC 419
Query 465 -GAGTT-T--C-GAG-T-T-AAA--GA---TTTCTGATTTCGGGTTGTCCAAAAGAGAGG 511
| ||| | | | | | | ||| || |||||||||| |||||||| |||||||| |
Sbjct 420 TG-GTTCTGTCTGCGATCTCAAATTGAAGATTTCTGATTTTGGGTTGTCGAAAAGAGATG 478
Query 512 GAGATAACAAC-TGGTGGCTTCCTAGTCA-TCCTTTTGCGGGAACACCGATATATATGTC 569
|||| | | || ||||||| |||| | | || | | |||||||||||||| ||||||||
Sbjct 479 GAGACA-CTACGTGGTGGCATCCTCTTAAATCGTAT-GCGGGAACACCGATCTATATGTC 536
Query 570 GCCGGAATCCATTTCT-ACGGGCGAGACAAGGAGAGGT-TTGGATTTATGGTCGTTAGGA 627
|||||| || || ||| ||||| |||| | ||| ||| ||| | ||||||||||| |||
Sbjct 537 GCCGGAGTCTATCTCTCACGGG-GAGATAGGGAAAGGACTTG-ACTTATGGTCGTTGGGA 594
Query 628 TGT 630
|||
Sbjct 595 TGT 597
> AT2G41920.1 | Symbols: | Protein kinase superfamily protein
| chr2:17499404-17500452 FORWARD LENGTH=1049
Length=1049
Score = 322 bits (174), Expect = 4e-87
Identities = 334/410 (81%), Gaps = 16/410 (4%)
Strand=Plus/Plus
Query 68 GTTCGTCCGGTTCGGTGAGTCTCATCAAGTACAATGGACGCCGCGACGGCGAAACGCTTT 127
|||||| ||||||||||||||| |||||||||| ||| ||||||||||| || | |
Sbjct 88 GTTCGTTTGGTTCGGTGAGTCTCTTCAAGTACAAAAGACAACGCGACGGCGAGACTCAAT 147
Query 128 ACGCCGCCGTGAAAACCTCCAAC-ATC-ATTCACGCTGACACTCTCTACAAAGAGTTTCA 185
|||||||||||||||| || | | | | | | ||| | |||||||||||||||||||
Sbjct 148 ACGCCGCCGTGAAAACATCTAGCGA-CGA-AAATGCTAAGTCTCTCTACAAAGAGTTTCA 205
Query 186 GATCTTGTC-CGAATTCAAAGGATGTTCAAGAATCGTCCAATGCTATGGGACCAAAGTAG 244
|||| | || | ||||||| || ||||| ||||||||||||||||| |||| ||||
Sbjct 206 GATCCTCTCTC-AATTCAAGGGTTGTTCGAGAATCGTCCAATGCTACGGGAATGGAGTAA 264
Query 245 AAGAGAGAATCACCGACGACGGTGACGTAGAGTTCAAGATT-CACATGGAGTACGCATCT 303
|||||| | | | |||| | ||| ||||||| | ||||||| | |||||||||||||| |
Sbjct 265 AAGAGATATTTAACGACAAGGGTTACGTAGAATACAAGATTGC-CATGGAGTACGCATTT 323
Query 304 GGAGGAAGCTTGAGAAATTTTAT-GAGCAGATTCAAGGAAATG-AAATTGCCTGATCCTT 361
|||||||||||||| |||| || || | ||||||| || | | |||||| ||||| |
Sbjct 324 GGAGGAAGCTTGAGCGATTTCATGGA-CCGATTCAAAGACA-GAAAATTGTCTGATTCGA 381
Query 362 TGATCAGAAG-GTTTACGCGTATGATTCTTGAGGGTTTAG-CAGTTATTCATGGACACGG 419
||||||| || |||||| |||||| |||| |||||||||| || ||||| |||||||
Sbjct 382 TGATCAG-AGAGTTTACTCGTATGCTTCTCGAGGGTTTAGCCA-CGATTCACAGACACGG 439
Query 420 CTATGTTCACTGCGATCTCAAACCCGAAAACATCCTCGTTTTCCCGAGTT 469
|||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 440 CTATGTTCACTGCGATCTCAAACCCGAAAACATCCTTGTTTTCCCTAGTT 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5