BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480130
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein w... 1550 0.0
AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protei... 510 2e-143
> AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein
with RNA-binding domain | chr2:1858543-1861895 REVERSE LENGTH=2436
Length=2436
Score = 1550 bits (839), Expect = 0.0
Identities = 969/1032 (94%), Gaps = 7/1032 (1%)
Strand=Plus/Plus
Query 1 ATGAATTTCACTGAATCAATGAACGTTGTGCACAACAGAATCCAACAACTTGAACCAGAG 60
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 ATGAATTTCACAGAATCAATGAACGTTGTGCACGCCAGAATCCAACAACTTGAACCAGAG 417
Query 61 AATGCATCAAAGATCATTGGTTATCTCTTGTTGATGCAAGACAATGGCAATCGCGACATG 120
|||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 418 AATGCAGCAAAGATCTTTGGTTATCTCTTGTTGATGCAAGAAAATGGCAACCGCGACATG 477
Query 121 ATCCGTCTCGCGTTCTGTCCTGATTCTGTGATGCGTTCTGTCATCAATTGCGTTAAATAC 180
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 478 ATCCGTCTCGCGTTCTGTCCTGATTCTGTTATGTGTTCTGTCATCAATTGCGTTAAATAC 537
Query 181 GAGTTAGCTAAGAATGCTCATCATTACCACAGCCCTCCTTCTGATCACATTCCTAGTCAT 240
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 GAGTTAGCTAGGAATTCTCATCATTACCACAGCCCTCCTTCTGATCACATTCCTACTCCC 597
Query 241 AAATTTGGATCATTCACGGGTTCATCGCCTCTTTCGGTTTCTGTTTCTCCTCCCGTGAAA 300
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 598 AAATTTGGATCATTCACCGGTTCATCGCCTCTTTCGGTTTCGGTTTCTCCTCCCATGAAA 657
Query 301 ACCGGTTTCTGGGAGAATTCAACCGAGATGGATACCTTGCAGAACAATCTTCAGTTCTTG 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACCGGTTTTTGGGAGAATTCAACCGAGATGGATACCTTGCAGAACAATCTTCAGTTCTTG 717
Query 361 AATTTTGAGGATTCATTGACCAGCCCTGAATTCTCTAACGGTTTCTTCTCTCAAGACCGT 420
|||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 718 AATTTTGAGGATCCTTTGACCAGCCCTGAATTCTCTAACGGGTTCTTCTCTCAAGAACGT 777
Query 421 CAATGTTTGCCTTTGCGAACGAGCAGGAGATCCCCGAGTTTACCCGAGTTCCCGGTCAAA 480
|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||
Sbjct 778 CAATGTTTGCCTTTGCGAACTAGCCGAAGATCCCCGAGTTTACCCGAGTTCCCGGTAAAA 837
Query 481 ATCTGTCATTACTTCAACAAAGGGTTCTGCAAACACGGCAACAACTGTAGGTACTTCCAC 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATCTGCCATTACTTCAACAAAGGGTTCTGCAAACACGGCAACAACTGTAGGTACTTCCAC 897
Query 541 GGGCAGATTATACCGGAGAGGGAGAGTTTTGCTCAGATGTTTAATCCAAACAACAACCTA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGGCAGATTATACCGGAGAGGGAGAGTTTTGCTCAGATGTTTAATCCAAACAACAACCTA 957
Query 601 AATGAAGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAGGAGAGATCATC 660
| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 AGTGACGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAGGTGAGATCATT 1017
Query 661 GAGTTGCTCAAAGC-AAGAAGAGGTGCTCCAATCTCCATAGCTTCATTGCCGATGATGTA 719
||||| ||||| | ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1018 GAGTTACTCAA-GTTAAGAAGAGGAGCTCCAATCTCCATAGCTTCATTGCCAATGATGTA 1076
Query 720 C-AGTGAAACATACGGTAGGACTCTTCAAGCTGAAGGATATTTAACAGAGTCACAACGAC 778
| | |||| ||||||||||||||||||||||||||||||| | || ||||||||| |||
Sbjct 1077 CTAC-GAAAAATACGGTAGGACTCTTCAAGCTGAAGGATATCTCACTGAGTCACAAAGAC 1135
Query 779 ATGGCAAAGCTGGCTATAGCCTCACCAAGCTTCTTGCTCGCTTGAAGAACACCATCCGCC 838
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 1136 ATGGCAAAGCTGGCTATAGTCTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCC 1195
Query 839 TCATCGACAGGCCTCATGGGCAGCATTCAGTTATATTAGCAGAAGATGCATCAAAGTTTG 898
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1196 TCGTCGACAGGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTG 1255
Query 899 TGGAATACACGGGAGAGAGAAACGAACACGGAGCGATCCTTGCTGGTTCTAGACAGATTT 958
|||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 1256 TGGAATACACTGGAGAGAGAAATGAACATGGAGCAATCCTTGCTGGTTCTAGACAGATTT 1315
Query 959 ACTTAACATTTCCGGCAGAGAGCAGTTTCACTGAACATGATGTCTCCA-CTACTTTACCA 1017
||||||| |||||||||||||| ||||||||||||||||||||||| | |||||| |||
Sbjct 1316 ACTTAACGTTTCCGGCAGAGAGTAGTTTCACTGAACATGATGTCTCAATCTACTTCACCT 1375
Query 1018 CAT-TCGGACAT 1028
||| | ||||||
Sbjct 1376 CATAT-GGACAT 1386
Score = 1423 bits (770), Expect = 0.0
Identities = 947/1026 (92%), Gaps = 38/1026 (4%)
Strand=Plus/Plus
Query 1029 AATGTTTGGATTTGTAACATTTGCTTGCACAGAAACCGTTAAACTCATTCTTGCTAAAGG 1088
||||| |||||||||||||||||||| | ||||||| ||||||| |||||||||||||||
Sbjct 1422 AATGTATGGATTTGTAACATTTGCTTCCTCAGAAACAGTTAAACACATTCTTGCTAAAGG 1481
Query 1089 CAATCCTCATTTCGTTTGTGGTGCACGTGTTCTCGTCAAGCCTTACCGGGAAAAATCACG 1148
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1482 CAATCCTCATTTCATTTGCAATGCACGTGTTCTAGTCAAGCCTTACCGGGAAAAATCACG 1541
Query 1149 CTCTAGTCGATACCTTGACAATAACAAGCCTCTACACGGCATGCGTTATGGCTCTCAATT 1208
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 1542 CTCTAGTCGATACCTCGACAATTACAAGCCTCTACACGGCATGCGATATGGCTCTAAATT 1601
Query 1209 TATTGATAGAGACTTAGAGATAAACGCATTGCCACCGCGGGGTAGTGAGAGCTCAAGACT 1268
|||||| |||||| ||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 1602 TATTGAGAGAGACATAGAGATGAACACATTGCCACCGCGGGTTAGTGAGAGCTCAAG--- 1658
Query 1269 AATGAGGAAGCCATTTCTTAGTGAGCCTGAACAATCTGTTTCTAAGTCCTTACCTACTAA 1328
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1659 AATGAGGAAGCCATTTCTTAGTGAGCCTGAACAATCAGTTTCTAAGTCCTTACCTACTAA 1718
Query 1329 TTACTCCTACCTCGGCTTCTCCTCGGATGACGTCAAGCTAACATCAAACGCGGAGCAAGA 1388
||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||
Sbjct 1719 TTACTCCTACCTCGGCTTCTCCTCGGATGACTTCAAGTTAACATCAAATGCGGAGCAAGA 1778
Query 1389 GGAACAAGCGGAACGGTTGAGCTACCTACTGGACTATTTGAACACCGAAGACAATGTCAT 1448
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1779 GGAACAAGCAGAACGGTTGAGCTACCTACTGGACTATTTGAACACGGAAGATAATGTCAT 1838
Query 1449 GAACATAACCACTAACTACAGAGACAATGATCGGAGAACTCATTGTGAATCGTTGGACAG 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 GAACATAACCACTAACTACAGAGACAATGATCGGAGAACTCATTGTGAATCGTTGGACAG 1898
Query 1509 TCAAGTCCTGAATCTACCCGAGAGTCCGTTTTCTTCCCTTTCCGGGAAGGAGATTTCAAC 1568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1899 TCAAGTCCTGAATCTACCCGAGAGTCCGTTTTCTTCCCTTTCGGGGAAGGAGATTTCAAC 1958
Query 1569 GGTTACATAGAGAGAAAGACTGATACCTAACCAAAAGGAGAGAAGAACATAGGAGCATAA 1628
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1959 GGTTACATAGAGAGAAAGACTGATACCTAACCAAAGGGAGAGAAAAACATAGGAGCATAA 2018
Query 1629 AGGTTAGAGGGAATCCCCAAAGATCTAATCAATCGGCAAAAAAGAGATTTGTTTTTTCAT 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 AGGTTAGAGGGAATCCCCAAAGATCTAATCAATCGGCAAAAAAGAGATTTGTTTTTTCAT 2078
Query 1689 TATCTTCTTTCGGTTTTAGACTGATGGATGGCATGGAGACTTTTAGGTTCTTTAGCAATA 1748
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2079 TATCTTCTTTCGGTTTTAGACTGATCGATGGCATGGAGACTTTTAGGTTCTTTAGCAATA 2138
Query 1749 ACAC-ATCAAAAGAAAAGGAAATAAAAAGTGACAGA-AA-CACACAAAGAAGAGCATGTT 1805
|||| | |||| |||||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 2139 ACACCA-CAAA-GAAAAGGAAATAAAAAGTGACAGAGAAACACACAAAGAAGAGC-TGTT 2195
Query 1806 AGCTTCAGGTTTA-AAATAAGAGCCGAGCAGTTTGAGAGACAATTAC--AATGGGGTATA 1862
||||||||||||| ||| |||||||||||||||||||| ||| ||| || ||||||||
Sbjct 2196 AGCTTCAGGTTTACAAA-AAGAGCCGAGCAGTTTGAGAAACA-TTAAGTAAAGGGGTATA 2253
Query 1863 ATAATAAG-A-AC-AA--TT-GGAATGTTT-ATTAAGGGTTAATTTTATATATGttcttt 1915
||||||| | | || || ||||||||| || |||| |||||||| ||| ||||||||
Sbjct 2254 ATAATAATTATAATAACATTTGGAATGTTTTATGAAGG-TTAATTTTCTATTTGTTCTTT 2312
Query 1916 ttcttttcaactttttctttATGCTGCTTCATCATATCTCACTGTATCATATGAAAATCC 1975
|||||||||||||||| || ||||| ||||||||||| ||| |||||||||| ||
Sbjct 2313 TTCTTTTCAACTTTTT-TT-ATGCTACTTCATCATATTTCATTGTATCATAT------CC 2364
Query 1976 TTTT-AGTTTTAAGAAAAAA-GGTTT-CTTGtatatactata---ta-taataataataa 2028
|||| ||||||||||||||| ||||| |||||||||| |||| || ||||||||||||
Sbjct 2365 TTTTTAGTTTTAAGAAAAAAAGGTTTTCTTGTATATA-TATAAAATAATAATAATAATAA 2423
Query 2029 tTGAAA 2034
||||||
Sbjct 2424 TTGAAA 2429
> AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein
/ RNA recognition motif (RRM)-containing protein | chr3:19645660-19646962
FORWARD LENGTH=1146
Length=1146
Score = 510 bits (276), Expect = 2e-143
Identities = 379/428 (89%), Gaps = 9/428 (2%)
Strand=Plus/Plus
Query 590 ACAACAACCTAAATGAAGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAG 649
|||||||||||| || |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 554 ACAACAACCTAAGCGACGAAGAGCATGTTGTTTCCCCTGGATCACTTGAGAAGCTAGAAA 613
Query 650 GAGAGATCATCGAGTTGCTCAAAGCAAGAAGAGGTGCTCCAATCTCCATAGC-TTCATTG 708
|||||||||| ||| |||| ||| ||||||||||||||||||| |||||||| || |||
Sbjct 614 GAGAGATCATTGAGCTGCTTAAATCAAGAAGAGGTGCTCCAATTTCCATAGCATT-TTTG 672
Query 709 CCGATGATGTA-CAGTGA-AACATACGGTAGGACTCTTCAAGCTGAAGGATATTTAACAG 766
|| |||||||| || || || || ||||||| ||||||||||||||||||| | ||||
Sbjct 673 CCAATGATGTACCA-CGAGAA-GTATGGTAGGAGTCTTCAAGCTGAAGGATATCTCACAG 730
Query 767 AGTCACAACGACATGGCAAAGCTGGCTATAGCCTCACCAAGCTTCTTGCTCGCTTGAAGA 826
|||||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 731 AGTCACAAAGACATGGCAAAGCTGGTTTTAGCCTCACCAAGCTTCTTGCTCGCTTAAAGA 790
Query 827 ACACCATCCGCCTCATCGACAGGCCTCATGGGCAGCATTCAGTTATATTAGCAGAAGATG 886
||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||
Sbjct 791 ACACCATCCGCCTCATCGACAGGCCTCATGGACAACATTCAGTTATACTAGCTGAAGATG 850
Query 887 CATCAAAGTTTGTGGAATACACGGGAGAGAGAAACGAACACGGAGCGATCCTT-GCTGGT 945
|||||||||||||||||| ||||||||||||| |||||| ||||| ||| || ||||||
Sbjct 851 TATCAAAGTTTGTGGAATATACGGGAGAGAGAAGCGAACATGGAGCAATC-TTAGCTGGT 909
Query 946 TCTAGACAGATTTACTTAACATTTCCGGCAGAGAGCAGTTTCACTGAACATGATGTCTCC 1005
|| || ||| ||||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct 910 TCAAGGCAGGTTTACTTGACATTTCCGGCAGAGAGTAGTTTCACTGAACATGACGTTTCA 969
Query 1006 A-CTACTT 1012
| ||||||
Sbjct 970 AACTACTT 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100802694360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5