BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480131
Length=3271
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05170.1 | Symbols: ATVPS11, VPS11 | vacuolar protein sortin... 4935 0.0
> AT2G05170.1 | Symbols: ATVPS11, VPS11 | vacuolar protein sorting
11 | chr2:1869877-1873812 FORWARD LENGTH=3334
Length=3334
Score = 4935 bits (2672), Expect = 0.0
Identities = 3008/3171 (95%), Gaps = 20/3171 (1%)
Strand=Plus/Plus
Query 19 GACCGTTTCGGCCGTCTACGGATTGCGACCAAATTAGCTTGATCTGATCGGAAAAAACAG 78
|||| ||||| |||| || |||||||| ||||||||| |||||||||||| |||| ||
Sbjct 37 GACCTTTTCGACCGTAAACCGATTGCGATCAAATTAGC-TGATCTGATCGG-AAAATCAC 94
Query 79 AAGAAAACCCTAG-AAATTCCTCCGGATTCGAATTCTCGATTCGATTCAATGTACCAGTT 137
||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| || ||
Sbjct 95 AAGAAAACCCTAGAAAACTCCTCCGGATTCGAATTCTCGACTCGATTCAATGTATCAATT 154
Query 138 GAGAAAATTCGACTTCTTCGAAGAGAAATACGGAGGTAAGATCCCTGATGATGTGACCGG 197
||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||
Sbjct 155 GAGAAAATTTGACTTCTTCGAGGAGAAATACGGAGGCAAGATACCTGAGGATGTAACCGG 214
Query 198 AGATATACAATGTTGCTCGAGTGGCCGTGGTAAAGTCGTCATCGGCTCTAACGACGGATC 257
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 215 AGATATACAATGTTGTTCCAGTGGCCGTGGCAAAGTCGTCATCGGCTCTAACGACGGATC 274
Query 258 CGTCAGCTTCATCGATCGCGGTATCAAGTTCGATTCCGGTTTCCAAGCTCACTCTTCCTC 317
|||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 275 CGTCAGCTTCCTCGATCGCGGTGTAAAGTTCGATTCCGGTTTCCAAGCTCACTCTTCCTC 334
Query 318 CGTCCTCTTCCTTCAGCACCTCAAGCAAAGGAA-TTTCCTTGTCACCGTTGGAGAAGATG 376
||||||||||||||| ||||||||||||||||| ||| || |||||||| ||||||||||
Sbjct 335 CGTCCTCTTCCTTCAACACCTCAAGCAAAGGAACTTT-CTCGTCACCGTCGGAGAAGATG 393
Query 377 AACAAATATCGCCGCAGCAGTCAGGGATGTGTCTCAAGGTATTTGACCTTGAAAAAGTTC 436
|||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 394 AACAAATATCGCCGCAACAGTCAGGGATGTGTCTTAAGGTTTTTGATCTTGACAAAGTTC 453
Query 437 AGGAGGAAGGCACTAGTTCCTCGGCTCCTGAATGCATTGGTATTCTAAGAATATTCACTA 496
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 454 AGGAGGAAGGTACTAGTTCCTCGGCTCCTGAATGCATTGGTATTCTTAGAATTTTCACCA 513
Query 497 ATCAGTTTCCTGAAGCTAAGATTACTTCTTTTCTAGTCTTGGAGGAAGTTCCACCCATAT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 514 ATCAGTTTCCTGAAGCTAAGATTACTTCTTTTCTAGTCTTGGAGGAAGTTCCACCAATAT 573
Query 557 TGCTTATAGCCATTGGCTTAGATAATGGCTGCATTTATTGTGTCAAAGGAGACATTGCAA 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TGCTTATAGCCATTGGCTTAGATAATGGCTGCATTTATTGTGTCAAAGGAGACATTGCAC 633
Query 617 GAGAACGTATCACTCGGTTTAAGCTTCAAGTGGATGGACGATCTACGATTACAGGCTTGG 676
|||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 634 GAGAGCGTATCACTCGGTTTAAGCTTCAAGTGGATGGACGGTCCGCTATTACAGGCTTGG 693
Query 677 GGTTTAGGATGGATGGTCAAGCGCTTCTGTTGTTTGCTGTAACTCCAGACTCAGTCAACT 736
|||| ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||
Sbjct 694 GGTTCAGGATGGATGGCCAAGCGCTTCTGTTGTTTGCAGTCACTCCAGAGTCAGTCAACT 753
Query 737 TGTTTAGTATGCAGGCGCAACCACCTAAATTGCAGACTTTGGATCATATTGGGGGCAGTG 796
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 754 TGTTTAGTATGCAGGCGCAGCCACCGAAATTGCAGACTTTGGATCATATTGGGGGCAGTG 813
Query 797 TGAATACTGTTACAATGAGTGACCGCTCGGAATTAATAGTTGGTCGACCTGAGGCTGTTT 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGAATACTGTTACAATGAGTGACCGCTCGGAATTAATAGTTGGTCGACCTGAGGCTGTTT 873
Query 857 ATTTCTATGAAGTTGATGGACGTGGTCCTTGCTGGGCTTTTGAAGGAGAGAAAAAATTCA 916
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ACTTCTATGAAGTTGATGGACGTGGTCCTTGCTGGGCTTTTGAAGGAGAGAAAAAATTCA 933
Query 917 TGGGGTGGTTCCGTGGCTACCTTTTATGTGTTATTGCTGACTCTAAAACCGGGAACACTG 976
||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||||||
Sbjct 934 TGGGGTGGTTCCGTGGCTACCTTTTATGTGTCATTGATGATTCTAAAACTGGGAACACTG 993
Query 977 TTTTTAATGTCTACGACCTCAGGAATCGGCTTATAGCATATAGTATAGTCGTTGGTAAAG 1036
||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 994 TTTTTAATGTCTACGACCTCAGGAATCGGCTTATAGCATATAGCATTGTCGTTGATAAAG 1053
Query 1037 TCTCCAACATGCTCTGTGAATGGGGAAACATAATACTTATAACGGCTGACAAATCATTAT 1096
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1054 TCTCCAACATGCTCTGCGAATGGGGAAACATAATACTTATAAAGGCTGACAAATCCTTAT 1113
Query 1097 TGTGCATCACCGAGAAGGATATGGAAAGCAAGTTAGATATGCTGTTCAAGAAAAACCAGT 1156
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1114 TGTGCATTACCGAGAAGGATATGGAAAGCAAGTTAGATATGCTGTTCAAGAAAAACCTGT 1173
Query 1157 ACACAGTAGCGATTAATCTTGTCCAGAGTCAGCATGCCGATGCTGCTGCTACCGCCAATG 1216
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1174 ACACAGTAGCTATTAATCTTGTCCAGAGTCAACATGCCGATGCTGCTGCTACTGCCAATG 1233
Query 1217 TGATGAGGAAGTATGGAGATCATTTGTATGGCAAACAGGACTTCGACGAAGCTATGTCT- 1275
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 1234 TGATGAGGAAGTATGGAGATCATTTATATGGCAAACAGGACTTTGACGAAGCTATGT-TA 1292
Query 1276 CAGTACATCAACACAATTGGTTATCTTGAACCATCATTTGTGATACAAAAGTTTCTGGAT 1335
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 CAGTACATTAACACAATTGGTTATCTTGAACCATCATTTGTGATACAAAAGTTTCTGGAT 1352
Query 1336 GCACAGAGGATCTACAATCTTACTAATTACCTGGAGAAGTTGCATGAGAAGGGTCTAGCA 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GCACAGAGGATCTACAATCTTACTAATTACCTGGAGAAGTTGCATGAGAAGGGTCTAGCA 1412
Query 1396 TCAAAAGACCACACAACTCTTTTGCTAAACTGTTACACTAAGTTGAAGGATGTAGAAAAG 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 TCAAAAGACCACACAACTCTTTTGCTAAACTGTTACACTAAGTTGAAGGATGTAGAAAAG 1472
Query 1456 CTGAACACTTTCATTAGAAAAGAAGATGGCATCGGTGAGCTCAAGTTTGATGTGGAAACA 1515
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 CTGAACACGTTCATTAGAAAAGAAGATGGCATCGGTGAGCTCAAGTTTGATGTGGAAACA 1532
Query 1516 GCCATTAGGGTCTGTCGTGCAGCTAATTACCATGAGCATGCAATGTACGTTGCAAAAAAG 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 GCCATTAGGGTCTGTCGTGCAGCTAATTACCATGAGCATGCAATGTACGTTGCAAAAAAG 1592
Query 1576 GCAGGAAAACATGAGTGGTATTTGAAAATTTTGCTTGAAGATCTTGGAAACTATGATGAA 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1593 GCAGGAAAACATGAGTGGTATTTGAAAATTTTGCTTGAAGATCTTGGAAACTACGATGAA 1652
Query 1636 GCCCTGCAATATGTTTCAAGTCTTGAACCCAGTCAAGCTGGGGTAACAATAAAAGAGTAT 1695
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1653 GCCCTGCAATATGTTTCAAGTCTTGAACCCAGTCAAGCTGGGGTAACAATTGAACAGTAT 1712
Query 1696 GGTAAGATTCTTATAGAGCACAAGCCGAAAGAGACTATTGATATACTCATGCGACTTTGC 1755
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1713 GGTAAGATTCTTATAGAGCACAAGCCAAAAGAGACTATTGATATACTCATGCGACTTTGC 1772
Query 1756 ACTGAGCAAGGGACTCCTAATGGTGTGTACCTGTCCATGTTGCCATCACCTGTGGACTTC 1815
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1773 ACTGAGCAAGGGATTCCTAATGGTGTGTTCCTGTCCATGTTGCCATCACCTGTGGACTTC 1832
Query 1816 ATCAATGTGTTTGTTCAGCATCCACATTCATTAATGCATTTTCTCGAGAGATATGCTGAA 1875
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 ATCACTGTGTTTGTTCAGCATCCACATTCATTAATGCATTTTCTCGAGAGATATGCTGAA 1892
Query 1876 ATAGTGAAGGATTCACCTGCTCAAGCAGAAATCAATAACACACTCTTGGAGTTATACTTG 1935
||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1893 ATAGTTCAGGATTCTCCTGCTCAAGCAGAAATCAATAACACACTCTTGGAATTATACTTG 1952
Query 1936 TCCAGGGACTTGAATTTTCCATCAATCTCTCTATCAGAAAATGGTCTAGATCAGGACTTA 1995
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1953 TCTAGGGACTTGAATTTTCCATCAATCTCTCTATCAGAAAATGGTCTAGATAAGGACTTA 2012
Query 1996 ACAGATCATTCAGTAGCACCTGCGGTGTCTAAAGCTGATCCTGAAAAGAGGACAAATACT 2055
| ||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 2013 ATAGATCATTCGGTAGCAGCTGCGGTGTCTAAAGCCGATCCTGAAAAGAAGACAAATGCT 2072
Query 2056 GATTCGAAGGATGCAATGGAGAAGGATTGTACCGAAAGACAACAGAAGGGACTGGAGTTG 2115
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2073 GATTCGAAGGATGCAATGGAGAAGGATTGTACGGAAAGACAACAGAAGGGACTGGAGTTA 2132
Query 2116 CTTAAAATGGCATGGCCGTCAGACCTAGAGCAACCCCTCTATGATGTTGACCTTGCTATA 2175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2133 CTTAAAATGGCATGGCCGTCAGACCTAGAGCAACCCCTCTATGATGTTGACCTTGCTGTA 2192
Query 2176 ATTCTTTGCGAGATGAATTCGTTCAAGGAGGGACTTCTGTATCTGTATGAAAAGATGAAA 2235
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2193 ATTCTTTGCGAGATGAATTCGTTCAAGGATGGACTTCTGTATCTGTATGAAAAAATGAAA 2252
Query 2236 CTTTACAAGGAGGTTATTGCTTGCTACATGCAGAATCATGATCACGAGGGACTGATTGCG 2295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 TTTTACAAGGAGGTTATTGCTTGCTACATGCAGAATCATGATCACGAGGGACTGATTGCA 2312
Query 2296 TGCTGCAAAAGATTAGGTGATTCTGGCAAGGGAGGGGATCCGTCTCTTTGGGCAGATCTT 2355
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2313 TGCTGCAAAAGATTAGGTGATTCTAGCAAGGGAGGGGATCCATCTCTTTGGGCAGATCTT 2372
Query 2356 CTCAAGTATTTTGGTGAAATTGGAGAGGACTGCTCCAAAGAAGTGAAGGAGGTTCTTACT 2415
||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 2373 CTCAAGTATTTCGGTGAAATTGGAGAGGACTGCACCAAAGAGGTGAAGGAGGTTCTCACT 2432
Query 2416 TATATTGAACGGGATGATATTTTACCTCCAATCATTGTTCTTCAGACCCTTGCAAAGAAT 2475
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2433 TATATTGAACGGGATGATATTTTACCTCCTATCATTGTTCTTCAGACCCTGGCAAAGAAT 2492
Query 2476 CCATGCCTCACACTCTCTGTCATCAAAGACTATATAGCCCGGAAACTTGAACAAGAATCA 2535
|||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||
Sbjct 2493 CCATGCCTCACACTTTCTGTCATCAAAGACTACATAGCTCGGAAACTTGAGCAAGAGTCA 2552
Query 2536 AAGATAATTGAAGAGGACCGGCGAGCAGTAGAGAAGTATCAGGAAACGACAAAAAACATG 2595
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2553 AAAATAATTGAAGAGGACCGGCGAGCTGTAGAGAAGTATCAGGAAACGACTAAAAACATG 2612
Query 2596 AGAAAAGAGATTGAAGACCTCAGGACGAATGCCAGAATATTTCAACTTAGCAAGTGCACT 2655
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2613 AGAAAAGAGATTGAAGATCTCAGGACCAATGCCAGAATATTTCAACTTAGCAAGTGTACT 2672
Query 2656 ACTTGCACTTTTACATTGGATATCCCAGCCGTCCATTTCATGTGTATGCACTCATTCCAT 2715
|||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2673 GCTTGCACTTTCACATTGGATATCCCAGCTGTCCATTTCATGTGTATGCATTCATTCCAT 2732
Query 2716 CAACGCTGCCTCGGTGACAACGAAAAAGAATGCCCTGAGTGTGCTCCCGAGTACAGATCT 2775
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2733 CAACGCTGCCTCGGTGACAACGAAAAAGAATGCCCCGAGTGTGCTCCCGAGTACAGATCT 2792
Query 2776 CTGATGGAAATGAAGAGAAGTTTGGAGCAGAACTCGAAAGACCAAGATCTGTTCTTCCAG 2835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2793 GTGATGGAAATGAAGAGAAGTTTGGAGCAGAACTCGAAAGACCAAGATCTGTTCTTCCAG 2852
Query 2836 CAAGTGAAAAGCTCGAAAGACGGGTTTTCTGTGATTGCAGAGTACTTTGGGAAAGGAATC 2895
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2853 CAAGTGAAAGGCTCGAAGGACGGGTTTTCTGTGATTGCAGAGTACTTTGGGAAAGGAATC 2912
Query 2896 ATCAGCAAAACTAGTGATGCAACATCTTAATTTTCTTCACGCCTGAGGGGAAGGCGGCTA 2955
|||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2913 ATCAGCAAAACTAGAGATGCAACATCTTAATTCTCTTCACGCCTGAAGGGAAGGCGGCTG 2972
Query 2956 AAACATCTCAAACTCAAGTGTGGCCGACATAAACTTTGTGGCATCTGTG-A-------A- 3006
||||||||| |||||||||| ||||| |||||||||||||||||||||| | |
Sbjct 2973 AAACATCTCCAACTCAAGTGAGGCCGGCATAAACTTTGTGGCATCTGTGTATTCTGTGAA 3032
Query 3007 TGTGAGGTATCCTTTGAATCTACTTTATCGGCGGAGATATTGTGTAAGAGTGAGTTG--C 3064
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 3033 TGTGAGGTATCCTTTGAATCTACTTTATCGGCTTAGATATTGTGTAAGAGTGAGTTGTGC 3092
Query 3065 TAGTGAAGTTGGGACAGGGT-TAATGCTTCTTCTTGTATGCATTTCTGAGATTCTGTGCC 3123
||||||||||||||| || | || ||||||||||||||| ||||||||||| ||||||||
Sbjct 3093 TAGTGAAGTTGGGACTGGCTCTA-TGCTTCTTCTTGTATACATTTCTGAGAATCTGTGCC 3151
Query 3124 ATGAATCAGGAAAAGATGCATAGATGTTGACAAGTTATAAAGTTTATTTTT 3174
|| | |||||||||||||||||||||| |||||||||| | |||| |||||
Sbjct 3152 ATCACTCAGGAAAAGATGCATAGATGTCGACAAGTTATTATGTTTGTTTTT 3202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162741563092
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5