BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480133
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05210.1 | Symbols: AtPOT1a, ATPOT1 | Nucleic acid-binding, ... 2089 0.0
AT2G04395.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 366 3e-100
> AT2G05210.1 | Symbols: AtPOT1a, ATPOT1 | Nucleic acid-binding,
OB-fold-like protein | chr2:1890941-1894367 FORWARD LENGTH=1993
Length=1993
Score = 2089 bits (1131), Expect = 0.0
Identities = 1437/1580 (91%), Gaps = 40/1580 (3%)
Strand=Plus/Plus
Query 6 AGATGGCGAGGAAGAGAGACAGTCCCAAGCTTATCAAAATCAAAGACGCCATTAATCTCA 65
||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 417 AGATGGCGAAGAAGAGAGAGAGTCCCAAGCTCATCAAAATCAAAGACGCCATTAAACTCA 476
Query 66 TCAACCAACAAGTTAGTCTAATCGGTATCGTTCTTGAACAAAGAGAACCAAAACAATGTC 125
||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 477 TCAACCAACAAGTCAGTCTCATTGGTATCGTCCTTGAACAAAGAGAACCAAAACAATGTC 536
Query 126 GCAACAATGATTGGATTTGTACGCTACGGATAATTGATGATACGTATCCAAGTCCTGGAT 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GCAACAATGATTGGATTTGTACGCTACGGATAATTGATGATACGTATCCAAGTCCTGGAC 596
Query 186 TTACTGTGAATGTATTTAGTAACACTCTTGAAGAGCTTCCTCAAATCAAGAACCACGACG 245
||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 597 TTACTGTTAATGTATTTAGTAAGACTCTTGAACAACTTCCTCAAATCAAGAACCACGACG 656
Query 246 ACATGATTCTCTTTACAT-GCATCAAGATGCAAACTTTTGATAGTGGAAAAAGAGTAAAT 304
|||||||||| ||||| | |||| |||||||||||||||||||||||| |||||||||||
Sbjct 657 ACATGATTCTGTTTAC-TCGCATTAAGATGCAAACTTTTGATAGTGGAGAAAGAGTAAAT 715
Query 305 GCTGCTTGTAATAAAAGGGTTTCTTCGTTTGCGCT-GTTCGAAGGTGAGGATTTTGTTTG 363
|||||||||| || | |||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 716 GCTGCTTGTAGTAGATGGGTTTCTTCCTTTGC-CTTGTTCGAAGGTGTGGATTTTGTTTG 774
Query 364 TTACCAATGTACTTCGAATTTTCATGAAGAAGAAGCACTATACAAGAGTGCGATGGCTGA 423
||||||||||| | | ||||||||||||||||||||| ||||||||||||| |||| |||
Sbjct 775 TTACCAATGTAGTACCAATTTTCATGAAGAAGAAGCATTATACAAGAGTGCCATGGATGA 834
Query 424 TCTGCGCAAATTTTTTGCTAGTTGTAGCGAAGTTGTTAGAGCTTTGCAGAGTATATCTTA 483
| | |||||| ||||||| |||||||| ||||| ||| |||| ||||||||||||||||
Sbjct 835 TTTACGCAAAGTTTTTGCGGGTTGTAGCCAAGTTATTAAAGCTATGCAGAGTATATCTTA 894
Query 484 CAGGACAGAACCCTGCTCTGTAGAAACTTTTTCATTCTTGAGAGAGATCAAGAAAGGAAA 543
||| ||| |||| ||||| | || |||||| ||||||||||||||||||| ||||||
Sbjct 895 CAGAACAAAACCTTGCTCCGAAGT---TTTTTCCTTCTTGAGAGAGATCAAGATAGGAAA 951
Query 544 ACGCTTTGATTTGGTGTGCAGGATTCTCCATGCCGATGAAAATA-TGAGCGCCGTTTTTG 602
|||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||
Sbjct 952 ACGCTTTGATTTGGTGTGCAGGATTCTCCATGCCGATGAAGATACT-AGCGCTGTTTTTG 1010
Query 603 TTTGGGATGGAACTGATGCACCCCCAGCATCTATTCTGGCAAAGAGAAGTGAAGAAGACA 662
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1011 TTTGGGACGGGACTGATGCACCCCCAGCATCTATTCTGGCTAAGAGAAGTGAAGAAGACA 1070
Query 663 AGGCATTTAGCAGTCTCTCTGTTCATACTTTACTGTCAAGAGATATATTGCTCAGCTTCC 722
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 1071 AGGCATTTAGCAGTCTCTCTGTTCATACTTTACTGTCAAGAGATGTACTGCTCAGCTTTC 1130
Query 723 CAACTGTTGGAACGATCTTGAGAGTTTC-TCTAAGCAGTCATCTATTTCATCGGGTTAAA 781
|||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 1131 CAACCGTTGGAACGATCTTGAGAGTT-CATCTAAGCAGTCATCTATTTTATCGGGTTAAA 1189
Query 782 CCTGGTGATTGGGTAGAA-CTTTACCAGTTACACTGTGAAGTTGATA-AGGGATCTTGGG 839
|||||||||||||| ||| |||||||| |||| |||||||||||||| ||| ||||||||
Sbjct 1190 CCTGGTGATTGGGT-GAAACTTTACCATTTACTCTGTGAAGTTGATAGAGG-ATCTTGGG 1247
Query 840 TAATCAAAGTTACCAACTCTACAAAGGTTCGTCATCTCGCTCAAGATGATTGTTTAGTTG 899
||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1248 TAATCAAAGTTACCAGCTCTACAAAGGTTCATCATCTCGCTCAAGATGATCGTTTAGTTG 1307
Query 900 AAAAGATCATGAGGCTATATAATAAGAGAATATCATCAAAATTGGGACACATTCCGTTCT 959
|||||||||||||| ||||| |||||||| |||||||||| |||||||||||| | ||||
Sbjct 1308 AAAAGATCATGAGGATATATGATAAGAGACTATCATCAAAGTTGGGACACATTTCATTCT 1367
Query 960 GGTGTTTTCCGTCACCTCCTGGATTAACAGAGACAGATGAGAATTGTGCCCCATTTGTTA 1019
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1368 GGTGTTTTCCGTCACCTCCTGGATTAACAGAGACAGATGACAATTGTGCCCCATTTGTTA 1427
Query 1020 CACTTATGGACATCATAACATTCCCCAAGGTTACATGCAAGTACAGATGCATTGTTCGGG 1079
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1428 CACTGATGGACATCATAACATTCCCCAAGGTTACATGCAAGTACAGATGTATTGTTCGGG 1487
Query 1080 TTGTAACTGCATATCCTTGGCAAGTAGATGATTTTTGTTCAAATGAGAATCGCCATCACC 1139
||||| |||||||||||||||||||||| ||||| |||||| |||||||||||| |||||
Sbjct 1488 TTGTAGCTGCATATCCTTGGCAAGTAGAGGATTTCTGTTCAGATGAGAATCGCCGTCACC 1547
Query 1140 G--A-GTTTTGTTGACTCTTGAGGATCCAACAGCGACTTTAGAGGCTTTCTTATGCGATA 1196
| ||||||||||| || |||||| ||||||||||||||||||||||||||||| |||
Sbjct 1548 ACCAAGTTTTGTTGACACTGGAGGATTCAACAGCGACTTTAGAGGCTTTCTTATGCAATA 1607
Query 1197 AAGATGCTGAGTACTTTTGGGGTTTAGGGTTTCAGGACACAGAGACATTGAGGAAGAAGC 1256
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1608 AAGACGCAGAGTACTTTTGGGGTTTAGGGTTTCAGGACACAGAGACGCTGAGGAAGAAGC 1667
Query 1257 GGAATTGGTTGCTCGGAATAAGGGAAAGCTTGAACTTTGTGGCTCCAAGAAATCCACCAT 1316
|||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1668 GGAATTGGTTGCTCGGTATACGGGAAAGCTCGAACTTTGTGGCTCCAAGAAATCCACCAT 1727
Query 1317 GGATAGAGTGCTGCATCCTCTCCTACTATACTAACAAAGCTGACCCGTGGAAAACCAGAT 1376
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1728 GGATCGAGTGCTGCATCCTCTCCTACTATACTAACAAAGCTGACCCGTGGAATACTAGAT 1787
Query 1377 TATACAGAATCTTTGGTACTAGACTACTTAACTAAGTAAA---AAGT-TTA---GT--AT 1427
||||||||||||||||||||||||||||| | |||||| |||| ||| | ||
Sbjct 1788 TATACAGAATCTTTGGTACTAGACTACTTCATTAAGTATTTGTAAGTGTTAAAAGAGGAT 1847
Query 1428 TAGG--GCTTAG-AT----C--ATGTTAAGAATGTTGGATGTTG-CTGACTTTAGTATGG 1477
|| | |||| || | |||||||||||||||||| ||| || |||| |||||||
Sbjct 1848 TAAATAGTTTAGTATTAGGCTCATGTTAAGAATGTTGGAT-TTGGCTTACTTAAGTATGG 1906
Query 1478 TAGTTGTGTTGTTTTATTTCATTAAGAACTTGTAACCAAACGAACATCTTCATGATATAA 1537
|||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||| |
Sbjct 1907 TAGTTGTGTTGTTTTAGTTCATGAAGACCTTGTAACCAAAAGAACATCTTCATGATATTA 1966
Query 1538 ACCAAATCCAACA-ACTGAA 1556
||||||||||| | ||||||
Sbjct 1967 ACCAAATCCAA-AGACTGAA 1985
> AT2G04395.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:1529083-1529954 REVERSE LENGTH=477
Length=477
Score = 366 bits (198), Expect = 3e-100
Identities = 243/265 (92%), Gaps = 2/265 (1%)
Strand=Plus/Plus
Query 8 ATGGCGAGGAAGAGAGACAGTCCCAAGCTTATCAAAATCAAAGACGCCATTAATCTCATC 67
||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGAAGAAGAGAGACAGTCCGAAGCTCATCAAAATCAAAGACGCCATTAAACTCATC 60
Query 68 AACCAACAAGTTAGTCTAATCGGTATCGTTCTTGAACAAAGAGAACCAAAACAATGTCGC 127
|||||| |||| ||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AACCAAGAAGTCAGTCTCATTGGTATCGTCCTTGAACAAAGAGAACCAAAACAATGTCGC 120
Query 128 AACAATGATTGGATTTGTACGCTACGGATAATTGATGATACGTATCCAAGTCCTGGATTT 187
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 121 AACAATGATTGGATTTGTACTCTCCGGATAATTGATGATACGTATCCAAGTCCTGGACTT 180
Query 188 ACTGTGAATGTATTTAGTAACACTCTTGAAGAGCTTCCTCAAATCAAGAACCACGACGAC 247
||||| ||||||| ||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 181 ACTGTTAATGTATATAGTAGGACTCTTGAACAACTTCCTCAAATCAAGAACCACGACGAC 240
Query 248 ATGATTCTCTTTACAT-GCATCAAG 271
|||||||| ||||| | |||| |||
Sbjct 241 ATGATTCTGTTTAC-TCGCATTAAG 264
Score = 124 bits (67), Expect = 2e-27
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 270 AGATGCAAACTTTTGATAGTGGAAAAAGAGTAAATGCTGCTTGTAATAAAAGGGTTTCTT 329
|||||||||||||||||||||||||||||||||| |||||||||| || | |||||||||
Sbjct 305 AGATGCAAACTTTTGATAGTGGAAAAAGAGTAAACGCTGCTTGTAGTAGATGGGTTTCTT 364
Query 330 CGTTTGCGCT-GTTCGAAGGTGAGGATTT 357
| ||||| || ||||||||||||||||||
Sbjct 365 CCTTTGC-CTTGTTCGAAGGTGAGGATTT 392
Score = 119 bits (64), Expect = 9e-26
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 565 GATTCTCCATGCCGATGAAAATATGAGCGCCGTTTTTGTTTGGGATGGAACTGATGCACC 624
||||||||||||||||||| ||| |||||| |||||||||||||| || |||||||||||
Sbjct 393 GATTCTCCATGCCGATGAAGATACGAGCGCTGTTTTTGTTTGGGACGGGACTGATGCACC 452
Query 625 CCCAGCATCTATTCTGGCAAAG 646
|||||||||||||||||| |||
Sbjct 453 CCCAGCATCTATTCTGGCTAAG 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5