BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480141
Length=496
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 763 0.0
AT4G13500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 726 0.0
> AT2G05310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G13500.1); Has 50 Blast
hits to 50 proteins in 20 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:1933272-1934212
REVERSE LENGTH=564
Length=564
Score = 763 bits (413), Expect = 0.0
Identities = 468/494 (95%), Gaps = 5/494 (1%)
Strand=Plus/Plus
Query 4 ATACAAAAACAAAACGTATAGTTGTTGGAAATGGCAGCCAAATTCCGCATTTCCTCTTCT 63
||||||||||||||||| |||||||||||||||||||| ||| || ||||| ||||||||
Sbjct 38 ATACAAAAACAAAACGTTTAGTTGTTGGAAATGGCAGCAAAACTCTGCATTCCCTCTTCT 97
Query 64 TCGTTTAGCCACAGGGCTAATGATTCCACAACCTCATCATCTTCTTCATATTCATCATTG 123
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 98 TCGTTTAGCCACAGAACTAATGATTCCATAACCTCATCATCTTCTTCATATTCATCATTG 157
Query 124 CTTGCTTTGCCTCAATTCCTCTGTCCACCACCACCATTACGATTCCCACAGTTCAAGCTT 183
|||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||
Sbjct 158 CTTGCTTTGCCTCAATTCTTCTGTCCACCATCTCCATTAGGATTCCCACAGTTCAAGCTT 217
Query 184 CACGCCAAATTAGGTGGAGGAGATGGAGAAGTGAAGCCTAAAGATAAGAAGAAGTTCATA 243
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CACGCCAAGTTAGGTGGAGGAGATGGAGAAGTGAAGCCTAAAGATAAGAAGAAGTTCATT 277
Query 244 ACCAAAGAGGAAGAACCAGAACAGTATTGGCAAAGCGTTGGAGAAAGAGAAGGAGAGAAT 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 ACCAAAGATGAAGAACCAGAACAGTATTGGCAAAGCGTTGGAGAAAGAGAAGGAGAGAAT 337
Query 304 CCGATGAAGACGCCTCTTCCTTACATAATCATCTTCGGTATGTCAACGCCATTCGTCATC 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 338 CCGATGAAGACGCCTCTTCCTTACATTATCATCTTCGGTATGTCAACGCCATTCGTCATC 397
Query 364 TTAGCCATTGCTTTCGCCAATGGTTGGATCAAAGTTCCCATTCGTTGA--GCCTTTCTTT 421
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 398 TTAGCCATTGCTTTTGCCAATGGTTGGATCAAAGTTCCCATTCGTTGATAGCCTTTCTTT 457
Query 422 TTTGCTTCTTCTTCTTCACTTGTTTAAGGCTGAATCTTAAACATGTTTCTTATACTCTTC 481
||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 458 TTTGCTTCTGCTAC---ACTTGTGTAAGGCTGAATCTTAAACATGTTTCTTATACTCTTC 514
Query 482 TTCTTCGACTGTAA 495
||||||| ||||||
Sbjct 515 TTCTTCGGCTGTAA 528
> AT4G13500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast
hits to 50 proteins in 20 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr4:7856767-7857933
REVERSE LENGTH=657
Length=657
Score = 726 bits (393), Expect = 0.0
Identities = 449/476 (94%), Gaps = 4/476 (1%)
Strand=Plus/Plus
Query 20 TATAGTTGTTGGAAATGGCAGCCAAATTCCGCATTTCCTCTTCTTCGTTTAGCCACAGGG 79
|||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||
Sbjct 46 TATAGTTGTTGGAAATGGCAGCGAAATTTCGAATTTCTTCTTCTTCGTTTAGCCACAGGG 105
Query 80 CTAATGATTCCACAACCTCATCATCTTCTTCATATTCATCATTGCTTGCTTTGCCTCAAT 139
||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 106 CTAGTGATTCCTCAACTTCATCATCTTCTTCATATTCATCATTGCTTGCTTTACCTCAAT 165
Query 140 TCCTCTGTCCACCACCACCATTACGATTCCCACAGTTCAAGCTTCACGCCAAATTAGGTG 199
|| | ||||||||| |||||||| |||||||| | ||||||||||| |||||||||||||
Sbjct 166 TCTTTTGTCCACCATCACCATTAGGATTCCCAGAATTCAAGCTTCATGCCAAATTAGGTG 225
Query 200 GAGGAGATGGAGAAGTGAAGCCTAAAGATAAGAAGAAGTTCATAACCAAAGAGGAAGAAC 259
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 226 GAGGAGATGGAGAAGTGAAGCCTAAAGATAAGAAAAAGTTTATAACCAAAGAGGAAGAAC 285
Query 260 CAGAACAGTATTGGCAAAGCGTTGGAGAAAGAGAAGGAGAGAATCCGATGAAGACGCCTC 319
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CTGAACAGTATTGGCAAAGCGTTGGAGAAAGAGAAGGAGAGAATCCGATGAAGACGCCTC 345
Query 320 TTCCTTACATAATCATCTTCGGTATGTCAACGCCATTCGTCATCTTAGCCATTGCTTTCG 379
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 346 TTCCTTACATTATCATATTCGGTATGTCAACTCCATTCGTCATCTTAGCCATTGCTTTTG 405
Query 380 CCAATGGTTGGATCAAAGTTCCCATTCGTTGAGCCTTTCTTTTTTGCTTCTTCTTCTTCA 439
|||||||||||||||||||||||||||||||||||||||||||| | || || |||||||
Sbjct 406 CCAATGGTTGGATCAAAGTTCCCATTCGTTGAGCCTTTCTTTTT-G-TT-TT-TTCTTCA 461
Query 440 CTTGTTTAAGGCTGAATCTTAAACATGTTTCTTATACTCTTCTTCTTCGACTGTAA 495
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 462 CTTGTTTAAGGCTGAATCTTAAACATGTTTCTTATACTCTTCTTCTTCGGCTGTAA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23660283237
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5