BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480146
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:19839... 732 0.0
AT2G05400.1 | Symbols: | Ubiquitin-specific protease family C1... 303 1e-81
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 294 9e-79
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 117 2e-25
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 117 2e-25
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 110 3e-23
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 76.8 3e-13
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 71.3 2e-11
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 67.6 2e-10
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 63.9 3e-09
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 62.1 9e-09
> AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:1983901-1985341
FORWARD LENGTH=894
Length=894
Score = 732 bits (396), Expect = 0.0
Identities = 594/682 (87%), Gaps = 44/682 (6%)
Strand=Plus/Plus
Query 136 AATAATTTGGCTCTCTATTTAATCGTTGCTAATAATGAATCTTTCCCTATTGGATGGAGA 195
|||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||| |
Sbjct 169 AATAATTTGGCTCTGTATTTAAACGTTGCTAATAGTAAATCTTTCCCTATTGGATGGACA 228
Query 196 AGACACGCAAAATTTTCTTTTACTTTAGTAAATCAAAAATCAGAAAATCTCTCCATACTA 255
|||||| | ||||||||| |||||||||||||||||||||||||||| ||||||| ||||
Sbjct 229 AGACACACTAAATTTTCTCTTACTTTAGTAAATCAAAAATCAGAAAAACTCTCCAAACTA 288
Query 256 AGAACAGAATCACAACACTGGTTTGATCAGAAGTCTACTAGCTGGGGGTTTCAAGAC-AT 314
| ||||||||||||||||||||||||| |||||||||||| ||||||||| || | ||
Sbjct 289 A---CAGAATCACAACACTGGTTTGATCATAAGTCTACTAGCCGGGGGTTTCCAG-CTAT 344
Query 315 GATTCCCCTCTCTGAA-CTTCATACCAAAGAGGGATTTCTGGTGAATGGAGAACTCATTG 373
|||||| ||| || || || ||||| || ||||||||||||||||||||||||||||
Sbjct 345 GATTCCTCTCACT-AATCTGCATACTAATGAGGGATTTCTGGTGAATGGAGAACTCACCC 403
Query 374 TTGTTGCCA-GGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGTATCT 432
||||||||| || |||| ||||||||||||||||||||||||||||| ||| || ||||
Sbjct 404 TTGTTGCCAAGG-TAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAAAGAAATCT 462
Query 433 TCATCAGTACTGGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGATATGC 492
||| ||||| |||||||| ||||||||||||||||||||||||||||| || | ||| |
Sbjct 463 TCACCAGTAATGGAAACCATAGATGTCAATGGGTTTCAAGTTCTTCCT-CA-A-ATA-G- 517
Query 493 TTTATACATCCTTTCCACTCGCACGTAGAATCAGTGAATCGTTTGTTCGAAAAACACCTA 552
| | || | || ||||| || | ||||| | |||| ||||||
Sbjct 518 ---A-A--TC----------G---GT-GAATC-GTT--T-GTTTG--C-AAAA-CACCTA 549
Query 553 GATATTGCATCAAAATTTCGTCCAAAGAATCCATATATGAAGACGGCGTACATGAATGTC 612
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 550 GATATTGCATCCAAATTTCGTCCAAAGAAACCATATATGAAGACGGCGTACATGAATGTT 609
Query 613 CTTATAAGCTTAACCAAGACGCTGTGCCAATCGCCTCAAGATCTCTCCAATGAGGATATG 672
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 610 CTCCTAAGCTTAACCAAGACGCTGTGCCAATCGCCTCAAGATCTCTCCAATGATGATATA 669
Query 673 TCTGGTGCAGGCGCTGCATTGACATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTG 732
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TCTGGTGCAGGCGCTGCACTGACATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTG 729
Query 733 gaaaagaaacttggtga-attaaaggaaaagaagaagaaagaagagaCGTCTTTGAAACG 791
|| ||||||| |||||| || |||||||||||||||||| |||||| | |||||||||||
Sbjct 730 GAGAAGAAACATGGTGAGAT-AAAGGAAAAGAAGAAGAAGGAAGAGGCTTCTTTGAAACG 788
Query 792 GCTGCAAGAAATGGAGGAACAG 813
|||||||||||||||| |||||
Sbjct 789 GCTGCAAGAAATGGAGAAACAG 810
> AT2G05400.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr2:1974886-1976570 FORWARD LENGTH=1415
Length=1415
Score = 303 bits (164), Expect = 1e-81
Identities = 281/335 (84%), Gaps = 17/335 (5%)
Strand=Plus/Plus
Query 159 CGTTGCTAATAATGAATCTTTCCCTATTGGATGGAGAAGACACGCAAAATTTTCTTTTAC 218
|||| || |||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||
Sbjct 449 CGTTCCTGATAAAGAATCTTTACCTATTGGATGAAGAAGCCACACAAAATTTTCTTTTAC 508
Query 219 TTTAGTAAATCAAAA-ATCAGAAAATCTCTCCATACTAAGAACAGAATCACAACACTGGT 277
|||||||||| |||| || ||||| ||||||| ||| | || || | | || || ||||
Sbjct 509 TTTAGTAAAT-AAAATTTCGGAAAAACTCTCCAAACTTA-AAGAG-A-CTCAGCAGTGGT 564
Query 278 TTGATCAGAAGT-CTACTAG-CTGGGGGTTTCA-AGACATGATTC-CCCTCTCTGAACTT 333
||||| |||| | || || | |||||||||| | ||| |||| || |||| ||||||||
Sbjct 565 TTGATAAGAA-TGCTCCT-GACTGGGGGTTT-ACAGAAATGA-TCAGCCTCACTGAACTT 620
Query 334 CATACCAAAGAGGGATTTCTG-GTGAATGGAGAACTCATTGTTGTTGCC-AGGATAGATG 391
||| | |||||||| ||||| | ||| |||||||||| ||||||||| ||| |||| |
Sbjct 621 CATGCGGAAGAGGGACTTCTGAG-GAACGGAGAACTCACCGTTGTTGCCAAGG-TAGAGG 678
Query 392 TTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGTATCTTCATCAGTACTGGAAACCG 451
|||||||||||||||||||||||||||| ||| ||| ||||||| ||||| | ||||||
Sbjct 679 TTCTTGAAGTTGTAGGAAAATTAGATGTATCAGAGGAATCTTCACCAGTAATTGAAACCA 738
Query 452 TAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
||||||||||||| |||||||||||||||||||||
Sbjct 739 TAGATGTCAATGGATTTCAAGTTCTTCCTTCACAG 773
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 294 bits (159), Expect = 9e-79
Identities = 278/335 (83%), Gaps = 9/335 (3%)
Strand=Plus/Plus
Query 155 TAATCGTTGCTAATAATGAATCTTTCCCTATTGGATGGAGAAGACACGCAAAATTTTCTT 214
||| |||| || |||| |||||||| |||| ||||||| |||||||||| ||| ||||||
Sbjct 337 TAAACGTTCCTGATAACGAATCTTTACCTACTGGATGGCGAAGACACGCTAAAGTTTCTT 396
Query 215 TTACTTTAGTAAATCAAAAATCAGAAAATCTCTC-CATACTAAGAACAGAATCACAACAC 273
||| ||||||||||||| |||||||| ||||| || || || || | | | || |||
Sbjct 397 TTAGTTTAGTAAATCAAGGTTCAGAAAAACTCTCTCA-ACGAA-AAGTG-A-CTCAGCAC 452
Query 274 TGGTTTGATCAGAAGTCTACTAGCTGGGGGTTTCAAG-ACATGATTCCCCTCTCTGAACT 332
||||||| ||| ||| || || ||||||||||| || | |||||| ||| | | |||||
Sbjct 453 TGGTTTGTTCAAAAGGCTTTTACCTGGGGGTTTCCAGTA-ATGATTACCCACACCGAACT 511
Query 333 TCATACCAAAGA-GGGATTTCTGGTGAATGGAGAACTCATTGTTGTTGCCAGGATAGATG 391
| | ||||| | |||||||||||| ||||||||||||| |||||||| | |||||| |
Sbjct 512 TAACGCCAAA-ATGGGATTTCTGGTAAATGGAGAACTCAAAGTTGTTGCTAAGATAGAGG 570
Query 392 TTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGTATCTTCATCAGTACTGGAAACCG 451
|||||||||||||||| ||||||||||| ||| ||| ||||||| || || || |||||
Sbjct 571 TTCTTGAAGTTGTAGGGAAATTAGATGTATCAAAGGAATCTTCACCAATAATGAAAACCA 630
Query 452 TAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
|||||||||||||||||||||||||||||||||||
Sbjct 631 TAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 665
Score = 104 bits (56), Expect = 2e-21
Identities = 77/87 (89%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 20 ATAAGACGATTACTTGGGTGATTAAAAATTTCTCCTCTTTGCCATCTGCATCAATTCAAT 79
||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||| | |
Sbjct 114 ATACGACGATTACTTGGGTGATTAAAAATTTCTCTTCTTTGCAATCTGCACCAATTTATT 173
Query 80 CTGATCA-ATTCGTTGTTGGTGGTTGC 105
| || || ||||||||||||||| |||
Sbjct 174 CCGA-CATATTCGTTGTTGGTGGCTGC 199
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 117 bits (63), Expect = 2e-25
Identities = 121/147 (82%), Gaps = 11/147 (7%)
Strand=Plus/Plus
Query 345 GGGATTTCTGGTGAATGGAGAACTCATTG-TTGTTGC-CAGGATAGATGTTCTTGAAGTT 402
||| ||| |||||||||||||| ||| | ||||||| ||| | | |||||||||||||
Sbjct 37 GGG-TTTATGGTGAATGGAGAAGTCA-AGATTGTTGCTGAGG-TTGGTGTTCTTGAAGTT 93
Query 403 GTAGGAAAATTAGATGT-TTCACAGGTATCTTCATCAGT-ACTGGAAACCGTAG-ATGTC 459
|| || |||| |||||| || | ||| | |||||| ||| | |||||| | | | |||||
Sbjct 94 GTTGGCAAATCAGATGTGTT-AGAGGAAACTTCATTAGTGA-TGGAAAGCAT-GTATGTC 150
Query 460 AATGGGTTTCAAGTTCTTCCTTCACAG 486
|||||||||||||||||||||||||||
Sbjct 151 AATGGGTTTCAAGTTCTTCCTTCACAG 177
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 117 bits (63), Expect = 2e-25
Identities = 120/146 (82%), Gaps = 9/146 (6%)
Strand=Plus/Plus
Query 345 GGGATTTCTGGTGAATGGAGAACTCATTG-TTGTTGCC-AGGATAGATGTTCTTGAAGTT 402
||| ||| |||||||||||||| ||| | |||||||| ||| | | |||||||||||||
Sbjct 223 GGG-TTTATGGTGAATGGAGAAGTCA-AGATTGTTGCCGAGG-TTGGTGTTCTTGAAGTT 279
Query 403 GTAGGAAAATTAGATGT-TTCACAGGTATCTTCATCAGT-ACTGGAAACCGTAGATGTCA 460
|| | |||| |||||| || | || | |||||| ||| | |||||| | | |||||||
Sbjct 280 GTTCGCAAATCAGATGTGTT-AGTGGAAACTTCATTAGTGA-TGGAAAGCATCGATGTCA 337
Query 461 ATGGGTTTCAAGTTCTTCCTTCACAG 486
||||||||||||||||||||||||||
Sbjct 338 ATGGGTTTCAAGTTCTTCCTTCACAG 363
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 110 bits (59), Expect = 3e-23
Identities = 246/331 (74%), Gaps = 34/331 (10%)
Strand=Plus/Plus
Query 173 AATCTTTCCCTATTGGATGGAGAAGACAC-GCAAAATTTTC-TTTTACT-TTAGTAAATC 229
||||||| |||| ||| |||| ||||||| | ||| | || || ||| || || ||||
Sbjct 188 AATCTTTGCCTAATGGTTGGAAAAGACACATC-AAA-TATCGCTTAACTGTT-GTTAATC 244
Query 230 AAAAATCAGA-AAATCTCTCC-ATACTAAGAACAG-AATCACAACACTGGTTTGATCAGA 286
||| || || ||| || ||| | || || | || ||| |||| ||||||| || | |
Sbjct 245 AAATGTCGGAGAAA-CTTTCCGA-AC--AGGA-AGTAAT-ACAAGGCTGGTTTTATAAAA 298
Query 287 AGTCTAC-TAGCTGGGGGTTT-CAAGAC-ATGATTCCCCTCTCTGAACTTCAT-ACCAAA 342
| | | | || || ||||| ||| || ||| ||||||| || |||||| | | ||||
Sbjct 299 ACT-TTCATATCT-CTGGTTTCCAA-ACAATGCTTCCCCTTTCCAAACTTCTTGA-CAAA 354
Query 343 GA--G-GGATTTCTGGTGAATGGAGAACTCATTG-TTGTTG-CCAGGATAGATGTTCTTG 397
| | || |||||||||||||| || ||| | |||||| | ||| ||| ||||||||
Sbjct 355 AATGGTGGGTTTCTGGTGAATGGTGATGTCA-AGATTGTTGTCGAGG-TAGGTGTTCTTG 412
Query 398 AAGTTGTAGGAAAATTAGATGT-TTCACAGGTATCTTCATCAGTAC-TGGAAACCGTAGA 455
|||| || || |||| |||||| || | ||| | ||| || ||| | | |||| | | ||
Sbjct 413 AAGTCGTTGGCAAATCAGATGTGTT-AGAGGAAACTTTATTAGTTCAT-GAAAGCATCGA 470
Query 456 TGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
| |||||||||||||||||||||||||||||
Sbjct 471 TATCAATGGGTTTCAAGTTCTTCCTTCACAG 501
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 76.8 bits (41), Expect = 3e-13
Identities = 93/117 (79%), Gaps = 8/117 (7%)
Strand=Plus/Plus
Query 374 TTGTTGCC-AGGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGT-TTCACAGGTATC 431
|||||||| ||| | | ||||||||||||||| || || | |||||| || | ||| | |
Sbjct 380 TTGTTGCCGAGG-TTGGTGTTCTTGAAGTTGTTGGCAAGTCAGATGTGTT-AGAGGAAAC 437
Query 432 TTCATCAG-TACTGGAAACCGT-AGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
|| | || || ||| | | | | ||||||||||||||||||||||||||||||||
Sbjct 438 TTTGTTAGTTAATGG-AGGCATCA-ATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 492
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 71.3 bits (38), Expect = 2e-11
Identities = 50/56 (89%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 431 CTTCATCAGTACTGGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
||||| ||||| ||||| | | |||||||||||||||||||||||||||||||||
Sbjct 200 CTTCACCAGTAAAGGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 255
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 451 GTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
||||||||||||||||||||||||||||||||||||
Sbjct 520 GTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 555
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 63.9 bits (34), Expect = 3e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 444 GGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 962 GGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 1004
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 62.1 bits (33), Expect = 9e-09
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 454 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
|||||||||||||||||||||||||||||||||
Sbjct 624 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5