BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480173

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05530.1 | Symbols:  | Glycine-rich protein family | chr2:20...   525    2e-148


> AT2G05530.1 | Symbols:  | Glycine-rich protein family | chr2:2029712-2030544 
FORWARD LENGTH=615
Length=615

 Score =  525 bits (284),  Expect = 2e-148
 Identities = 426/490 (87%), Gaps = 28/490 (6%)
 Strand=Plus/Plus

Query  20   AGAATGGCTTCCAAGGCTTTAGTTCTGTTGGGTCTATTTGCAGTTCTTCTCGTCGTCTCA  79
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct  41   AGAATGGCTTCCAAGGCTTTAGTTCTGTTTGGTCTATTTGCAGTTCTTCTCGTCGTCACA  100

Query  80   GAAGTCGCCGCTGCTGCATCCGGTACAGTTAAGTCCGAGAGTGAGGAAACCGTGAAAACT  139
            ||||| | | | ||||||||||||||||| ||||| ||||||| |||||||||| || ||
Sbjct  101  GAAGTTG-C-C-GCTGCATCCGGTACAGTGAAGTCAGAGAGTGGGGAAACCGTGCAACCT  157

Query  140  GATCAATATGGTGGTGACCATGGCGGTC-GTggaggctacaacggaggaggaggctacaa  198
            |||||||||  ||| |  || ||||| |  |||||||||||||||||||||||| |||||
Sbjct  158  GATCAATATAATGGCGGTCACGGCGG-CAATGGAGGCTACAACGGAGGAGGAGGTTACAA  216

Query  199  cggaggaggaggttacaatggaggaggacacaacagaggaggaagatacaat------gg  252
            ||||||||||||| |||| ||||||||  ||||| |||||||| ||||||||      ||
Sbjct  217  CGGAGGAGGAGGTCACAACGGAGGAGGTTACAACGGAGGAGGAGGATACAATGGAGGAGG  276

Query  253  --a-gga-g--g---TGGTTACTGCCGCTATGGCTGCTGCTACAGAGGTTACCGTGGCTG  303
              | ||| |  |   ||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct  277  ACACGGAGGAAGACATGGTTACTGTCGCTATGGCTGTTGCTACAGAGGTTACCATGGCTG  336

Query  304  TTCAAGGTGTTGTTCTTATGCTGGAGAAGCTGTTCAGACTCAGCCTGGTCACTAAA----  359
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
Sbjct  337  TTCAAGGTGTTGTTCGTATGCTGGAGAAGCTGTTCAGACTCAGCCTGGTCACTAAATTAA  396

Query  360  -CAATATAATAAGTTGACCACCATGCATGATGGTATCTAAATATACACTTATGTGTATAT  418
             |||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||
Sbjct  397  ACAATATAATAAGTTGACCACCATGCATGATTGTACCTAGATATACACTTACGTGTATAT  456

Query  419  GACTATAGGTAAAGTAATCATGGTGCGTTTGTAATGAAGTACGTTAAGAAGAGTAATGGG  478
            |||||||||| || |||| ||||||||||||||||||||| | |||  |||  |||||||
Sbjct  457  GACTATAGGTTAATTAATTATGGTGCGTTTGTAATGAAGTGCCTTAT-AAG--TAATGGG  513

Query  479  AATAAAGTTT  488
            ||||||||||
Sbjct  514  AATAAAGTTT  523



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5