BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480174

Length=829
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05580.1 | Symbols:  | Glycine-rich protein family | chr2:20...   440    9e-123


> AT2G05580.1 | Symbols:  | Glycine-rich protein family | chr2:2055549-2056700 
FORWARD LENGTH=1075
Length=1075

 Score =  440 bits (238),  Expect = 9e-123
 Identities = 390/459 (85%), Gaps = 28/459 (6%)
 Strand=Plus/Plus

Query  183  AAGTTGGTGAAAACTC-AGTGGAGGAGTCAAAGTCGACATGCAAGTACGGAAATTGTGCA  241
            |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct  124  AAGTTGGTGAAAAC-CAAGTGGAGGAGTCAAAGTCGACATGCAAGTATGGAAATTGTGCA  182

Query  242  CA-TGATGGAGAGATTCCTTTTGTAGAAGTAGATGAAGTCCTTGGTGG--A-GAAGAAGA  297
            || | ||||||||| || ||||||||||  |||||||||||||| |||  | ||||||||
Sbjct  183  CAGT-ATGGAGAGAATCATTTTGTAGAAACAGATGAAGTCCTTGATGGGGAAGAAGAAGA  241

Query  298  AGAATCCAAATCTGACCAAGTTGGAATTGGAAGAGGCCAAGGAGGACAGAAGGGCGGTGG  357
            ||||||||||  | |||||| ||||||||| ||||||||||||||||| || ||||||||
Sbjct  242  AGAATCCAAAAATAACCAAGGTGGAATTGGGAGAGGCCAAGGAGGACAAAAAGGCGGTGG  301

Query  358  TGGCGG---CCAAGGAGGACAGAA-GG-G-TGGTGGTGGCGGCCAAGGAGGACAGAAGGG  411
            ||| ||   |||||||||||| || || | ||| ||||| |||||||||||||| |||||
Sbjct  302  TGGTGGTGGCCAAGGAGGACAAAAAGGCGGTGGCGGTGGTGGCCAAGGAGGACAAAAGGG  361

Query  412  CGGTGGCGGCGGCCAAGGAGGACAGAAGGGCGGTggcggcggccaaggaggacagaaggg  471
             || || || |||||||||||||| ||||| || || || |||||||||||||| |||||
Sbjct  362  TGGCGGTGGTGGCCAAGGAGGACAAAAGGGTGGCGGTGGTGGCCAAGGAGGACAAAAGGG  421

Query  472  cggtggcggcgg---ccaaggaggacagaagggcggcggcggc------caaggaggaca  522
            ||||||||| ||   |||||| |||||||||||||| |||||       ||||| |||||
Sbjct  422  CGGTGGCGGTGGTGGCCAAGGGGGACAGAAGGGCGGTGGCGGTGGTGGACAAGGGGGACA  481

Query  523  gaagggcggcgg------cggccaaggaggacagaagggcggcggcggccaaggaggaca  576
            |||||| || ||      ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  482  GAAGGGTGGTGGTGGGGGCGGCCAAGGAGGACAGAAGGGTGGCGGGGGCCAAGGAGGACA  541

Query  577  gaagggcggcggcggccaaggcggacagaagggccgcgg  615
            |||||| ||||| |||||||| |||||||||||| ||||
Sbjct  542  GAAGGGTGGCGGGGGCCAAGGAGGACAGAAGGGCGGCGG  580


 Score =  200 bits (108),  Expect = 2e-50
 Identities = 120/126 (95%), Gaps = 0/126 (0%)
 Strand=Plus/Plus

Query  1    GTCAATAAATTTTGCATGTTGCAAAGAAAATGAAGATGAATTCGCGAGCTTTAATAGTGT  60
            |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct  1    GTCAATTAATTTTGCATGTTGCAAAGACAATGAAGATGAATTCGCGAGCTTTAATAGTTT  60

Query  61   GGTTTCTATTGTTGTCGGCAGTTTTCGCCATCACGGTTGTTGCCTCCGTCGATGACACAA  120
            ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||
Sbjct  61   GGTTTCTATTGTTGTCGGCTGTTTTCGCCATCAAGGTTGTTGCCTCCATCGATGACACAA  120

Query  121  AACAAG  126
            ||||||
Sbjct  121  AACAAG  126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40388254188


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5