BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480175
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05590.2 | Symbols: | TLD-domain containing nucleolar prote... 1404 0.0
> AT2G05590.2 | Symbols: | TLD-domain containing nucleolar protein
| chr2:2067097-2069206 FORWARD LENGTH=1266
Length=1266
Score = 1404 bits (760), Expect = 0.0
Identities = 1110/1270 (87%), Gaps = 60/1270 (5%)
Strand=Plus/Plus
Query 1 ATCTCCTAGCATCTGGCTTCTCTGTCGCAGCATCTTTCTCTTCCCTTT-CCCCACCGACA 59
|||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||
Sbjct 1 ATCTCCGAGCATCTGGCTTCTCTGT--C-GCATC-TTCTCTTCCCTTTCCCCCACCGAC- 55
Query 60 ATTCTATTGACATCATTCATCTCCGATCAAAAACTCCT-CTTTCTGATCACAATGCATGC 118
| ||| | | ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 56 A----ATT--C-T-ATTCATCTCCGATCAAAAACTATTCCTTTCTGATCACAATGCATGC 107
Query 119 TCTCAAGGACAAAGTCTCACAAAAACTTTCCAATCTCTTCGCCGATTCCCCAAGCCAATC 178
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 108 TCTCAAGGACAAAGTCTCACAAAAACTCTCTAATCTCTTCGCCGATTCTCCAAGCCAATC 167
Query 179 TGCTTCTCCTCGCTATTCCAACTCCGATTCTCCAAAGGCTAGGTTGAATTCAAGTGTAGG 238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TGCTTCTCCTCGTTATTCCAACTCCGATTCTCCAAAGGCTAGGTTGAATTCAAGTGTAGG 227
Query 239 CAAATCGTTGTCTTCGTATTTCTCATTTGTTGTTCCTCAATCTGGGAATGATGATGATTC 298
|||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 228 CAAATCATTGTCTTCGTATTTCTCATTTGTTGTTCCTCAATCTGGGAACGAGGAGGATTC 287
Query 299 TGAATCATGCCCACCTCTACCCATTAGAACAGAAAGCTATGAGTCTATTGAGAATTGCAA 358
||| | ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 288 TGAGTTATGTCCACCTCTACCCATTAGAACAGAGAGCTATGAGTGTATTGAGAATTGCAA 347
Query 359 ATCTGGAAATGGGCATGATCAAGCTGGGACCTTTA-AGGAA----T-CAGATAAGGATTG 412
||||| |||||||| | | ||||||| ||||||| || | ||||||||||||
Sbjct 348 ATCTGCTAATGGGCAAGCTAAAGCTGGAACCTTTATCTCAATTGGTGAAGATAAGGATTG 407
Query 413 TGAGTTACGTGTTTCTGCGAAAGTCGAAGAAAGCGGTAACGATTACTTTCTA-GGGGTGA 471
|||||||||||||||||||||||| |||||||| ||||| ||||||||| | |||||||
Sbjct 408 TGAGTTACGTGTTTCTGCGAAAGTAGAAGAAAGTGGTAATGATTACTTT-GATGGGGTGA 466
Query 472 AGCAGATGAGGGAATTAACGGAAG-GCTCTGTTTTTATTACTGCTAACTTGTGTGAATTC 530
|| |||||||||||||||| | || ||||||| ||||||||||||||||||| |||||||
Sbjct 467 AGAAGATGAGGGAATTAACAG-AGAGCTCTGTGTTTATTACTGCTAACTTGTTTGAATTC 525
Query 531 TTGCATGCGAGTCTTCCGAATATTGTAAGAGGATGCAAATGGATCTTGTTGTATAGTACG 590
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTGCATGCGAGTCTTCCTAATATTGTAAGAGGATGCAAATGGATCTTGTTGTATAGTACG 585
Query 591 TTGAAACATGGCATATCACTTCGTACGCTGCTT-CGAAGAAGCGGAGAGCTTCCTGGTCC 649
||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 586 TTGAAACATGGTATATCACTTCGTACGCT-TTTGCGAAGAAGTGGAGAGCTTCCTGGTCC 644
Query 650 TTGTTTACTGGTTGCTGGAGACAAAAAAGGTGCGGTTTTTGGCGCTCTGCTGGAATTTTC 709
||||||||||||||||||||||||| ||||||| || ||||| |||||| ||||| | ||
Sbjct 645 TTGTTTACTGGTTGCTGGAGACAAACAAGGTGCAGTGTTTGGAGCTCTGTTGGAA-TGTC 703
Query 710 CTTATTGCTGATTCTCTTCACATGTTTTTTGATGAT-AGGGTACAAGCCAGACATTCTTG 768
| | ||| | | || | | | || || |||||||||||||||||||||||
Sbjct 704 C--ACTGC--A-AC-CTACTCCTAAGAGGAAAT-ATCAGGGTACAAGCCAGACATTCTTG 756
Query 769 TTCACAACTATTTATGCAG-AGTA-ACTTGTTTAGGA--GA--AGTTCCAGAAGGAT-GC 821
|||||||||||||||| | | | | | |||| || | || ||| | |||
Sbjct 757 TTCACAACTATTTATGGTGAACCACGCATATTTA-GACCTACCGGTGCCA-ACCGATATT 814
Query 822 ACCTTTACTGTTTTTTGGATGACTTTTTTGGCGTTTGGAGGTGGAGGAAACTTTGCACTA 881
||| | | || | | || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 815 ACC-TGA-TG-TGTATGAATGA-ATTTTTGGCGTTTGGAGGTGGAGGAAACTTTGCACTA 870
Query 882 TGTTTAGACGAAGATTTGTTGAAGGCAACAAGTGGACCTTCTGAAACATTTGGGAACGAA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TGTTTAGACGAAGATTTGTTGAAGGCAACAAGTGGACCTTCTGAAACATTTGGGAACGAA 930
Query 942 TGCTTAGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGCTCTGGGGGTTTGCGCAT 1001
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 931 TGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGCTCTGGGGATTTGCACAT 990
Query 1002 GCATCTCAATACCTCTCCTCCTGATCTTGGAGATCCCTTTCTTTGTCAAGAATCGAGATA 1061
|| |||||||||||||| | |||||||||||||||| ||||||| |||||| |||||
Sbjct 991 GCGTCTCAATACCTCTCGTA---ATCTTGGAGATCCCTTACTTTGTCGAGAATCAAGATA 1047
Query 1062 CCTCAATAGAAAGAAAAGCTTAC-AGTCGTTTTTCAATCCGTTAATTGTTTTCAAACTTA 1120
|||||||||||||||||||||| | |||||||| |||| ||||||||||| |||| |||
Sbjct 1048 ACTCAATAGAAAGAAAAGCTTACTA-TCGTTTTTTAATCAGTTAATTGTTT-CAAAGTTA 1105
Query 1121 TGATTAGGCTTAAGGACAGTTTTTTAAGGCTTTAATCTGTTGAAAGAGTGCCAATATAAC 1180
|||||||||||||| ||| ||| | | ||||||||||||||||||||||| |||||| |
Sbjct 1106 TGATTAGGCTTAAG-ACACTTTCTCA-GGCTTTAATCTGTTGAAAGAGTGACAATATTAT 1163
Query 1181 ATGTTTGTATAATCTGTGAATTTTTAATGAGAATACTAATTCAGCTAAGACCTTATTGAA 1240
|||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1164 ATGTTTGTATCATCTGTGAATT---ACTGAGAATACTAATTCAGCTAAGACCTTATTGAA 1220
Query 1241 CACTTGTTTG 1250
|| || ||||
Sbjct 1221 CATTTATTTG 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5