BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480175 Length=1250 Score E Sequences producing significant alignments: (Bits) Value AT2G05590.2 | Symbols: | TLD-domain containing nucleolar prote... 1404 0.0 > AT2G05590.2 | Symbols: | TLD-domain containing nucleolar protein | chr2:2067097-2069206 FORWARD LENGTH=1266 Length=1266 Score = 1404 bits (760), Expect = 0.0 Identities = 1110/1270 (87%), Gaps = 60/1270 (5%) Strand=Plus/Plus Query 1 ATCTCCTAGCATCTGGCTTCTCTGTCGCAGCATCTTTCTCTTCCCTTT-CCCCACCGACA 59 |||||| |||||||||||||||||| | ||||| ||||||||||||| |||||||||| Sbjct 1 ATCTCCGAGCATCTGGCTTCTCTGT--C-GCATC-TTCTCTTCCCTTTCCCCCACCGAC- 55 Query 60 ATTCTATTGACATCATTCATCTCCGATCAAAAACTCCT-CTTTCTGATCACAATGCATGC 118 | ||| | | ||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 56 A----ATT--C-T-ATTCATCTCCGATCAAAAACTATTCCTTTCTGATCACAATGCATGC 107 Query 119 TCTCAAGGACAAAGTCTCACAAAAACTTTCCAATCTCTTCGCCGATTCCCCAAGCCAATC 178 ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 108 TCTCAAGGACAAAGTCTCACAAAAACTCTCTAATCTCTTCGCCGATTCTCCAAGCCAATC 167 Query 179 TGCTTCTCCTCGCTATTCCAACTCCGATTCTCCAAAGGCTAGGTTGAATTCAAGTGTAGG 238 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 TGCTTCTCCTCGTTATTCCAACTCCGATTCTCCAAAGGCTAGGTTGAATTCAAGTGTAGG 227 Query 239 CAAATCGTTGTCTTCGTATTTCTCATTTGTTGTTCCTCAATCTGGGAATGATGATGATTC 298 |||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 228 CAAATCATTGTCTTCGTATTTCTCATTTGTTGTTCCTCAATCTGGGAACGAGGAGGATTC 287 Query 299 TGAATCATGCCCACCTCTACCCATTAGAACAGAAAGCTATGAGTCTATTGAGAATTGCAA 358 ||| | ||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 288 TGAGTTATGTCCACCTCTACCCATTAGAACAGAGAGCTATGAGTGTATTGAGAATTGCAA 347 Query 359 ATCTGGAAATGGGCATGATCAAGCTGGGACCTTTA-AGGAA----T-CAGATAAGGATTG 412 ||||| |||||||| | | ||||||| ||||||| || | |||||||||||| Sbjct 348 ATCTGCTAATGGGCAAGCTAAAGCTGGAACCTTTATCTCAATTGGTGAAGATAAGGATTG 407 Query 413 TGAGTTACGTGTTTCTGCGAAAGTCGAAGAAAGCGGTAACGATTACTTTCTA-GGGGTGA 471 |||||||||||||||||||||||| |||||||| ||||| ||||||||| | ||||||| Sbjct 408 TGAGTTACGTGTTTCTGCGAAAGTAGAAGAAAGTGGTAATGATTACTTT-GATGGGGTGA 466 Query 472 AGCAGATGAGGGAATTAACGGAAG-GCTCTGTTTTTATTACTGCTAACTTGTGTGAATTC 530 || |||||||||||||||| | || ||||||| ||||||||||||||||||| ||||||| Sbjct 467 AGAAGATGAGGGAATTAACAG-AGAGCTCTGTGTTTATTACTGCTAACTTGTTTGAATTC 525 Query 531 TTGCATGCGAGTCTTCCGAATATTGTAAGAGGATGCAAATGGATCTTGTTGTATAGTACG 590 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 526 TTGCATGCGAGTCTTCCTAATATTGTAAGAGGATGCAAATGGATCTTGTTGTATAGTACG 585 Query 591 TTGAAACATGGCATATCACTTCGTACGCTGCTT-CGAAGAAGCGGAGAGCTTCCTGGTCC 649 ||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||| Sbjct 586 TTGAAACATGGTATATCACTTCGTACGCT-TTTGCGAAGAAGTGGAGAGCTTCCTGGTCC 644 Query 650 TTGTTTACTGGTTGCTGGAGACAAAAAAGGTGCGGTTTTTGGCGCTCTGCTGGAATTTTC 709 ||||||||||||||||||||||||| ||||||| || ||||| |||||| ||||| | || Sbjct 645 TTGTTTACTGGTTGCTGGAGACAAACAAGGTGCAGTGTTTGGAGCTCTGTTGGAA-TGTC 703 Query 710 CTTATTGCTGATTCTCTTCACATGTTTTTTGATGAT-AGGGTACAAGCCAGACATTCTTG 768 | | ||| | | || | | | || || ||||||||||||||||||||||| Sbjct 704 C--ACTGC--A-AC-CTACTCCTAAGAGGAAAT-ATCAGGGTACAAGCCAGACATTCTTG 756 Query 769 TTCACAACTATTTATGCAG-AGTA-ACTTGTTTAGGA--GA--AGTTCCAGAAGGAT-GC 821 |||||||||||||||| | | | | | |||| || | || ||| | ||| Sbjct 757 TTCACAACTATTTATGGTGAACCACGCATATTTA-GACCTACCGGTGCCA-ACCGATATT 814 Query 822 ACCTTTACTGTTTTTTGGATGACTTTTTTGGCGTTTGGAGGTGGAGGAAACTTTGCACTA 881 ||| | | || | | || |||| |||||||||||||||||||||||||||||||||||| Sbjct 815 ACC-TGA-TG-TGTATGAATGA-ATTTTTGGCGTTTGGAGGTGGAGGAAACTTTGCACTA 870 Query 882 TGTTTAGACGAAGATTTGTTGAAGGCAACAAGTGGACCTTCTGAAACATTTGGGAACGAA 941 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 871 TGTTTAGACGAAGATTTGTTGAAGGCAACAAGTGGACCTTCTGAAACATTTGGGAACGAA 930 Query 942 TGCTTAGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGCTCTGGGGGTTTGCGCAT 1001 || || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 931 TGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGCTCTGGGGATTTGCACAT 990 Query 1002 GCATCTCAATACCTCTCCTCCTGATCTTGGAGATCCCTTTCTTTGTCAAGAATCGAGATA 1061 || |||||||||||||| | |||||||||||||||| ||||||| |||||| ||||| Sbjct 991 GCGTCTCAATACCTCTCGTA---ATCTTGGAGATCCCTTACTTTGTCGAGAATCAAGATA 1047 Query 1062 CCTCAATAGAAAGAAAAGCTTAC-AGTCGTTTTTCAATCCGTTAATTGTTTTCAAACTTA 1120 |||||||||||||||||||||| | |||||||| |||| ||||||||||| |||| ||| Sbjct 1048 ACTCAATAGAAAGAAAAGCTTACTA-TCGTTTTTTAATCAGTTAATTGTTT-CAAAGTTA 1105 Query 1121 TGATTAGGCTTAAGGACAGTTTTTTAAGGCTTTAATCTGTTGAAAGAGTGCCAATATAAC 1180 |||||||||||||| ||| ||| | | ||||||||||||||||||||||| |||||| | Sbjct 1106 TGATTAGGCTTAAG-ACACTTTCTCA-GGCTTTAATCTGTTGAAAGAGTGACAATATTAT 1163 Query 1181 ATGTTTGTATAATCTGTGAATTTTTAATGAGAATACTAATTCAGCTAAGACCTTATTGAA 1240 |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1164 ATGTTTGTATCATCTGTGAATT---ACTGAGAATACTAATTCAGCTAAGACCTTATTGAA 1220 Query 1241 CACTTGTTTG 1250 || || |||| Sbjct 1221 CATTTATTTG 1230 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61445467080 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5