BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480185

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05630.2 | Symbols: ATG8D | Ubiquitin-like superfamily prote...   688    0.0  


> AT2G05630.2 | Symbols: ATG8D | Ubiquitin-like superfamily protein 
| chr2:2082986-2084882 REVERSE LENGTH=827
Length=827

 Score =  688 bits (372),  Expect = 0.0
 Identities = 412/432 (95%), Gaps = 0/432 (0%)
 Strand=Plus/Plus

Query  70   AAAAGAGGCAAGCTGAAGCAGCTCGTATCAGGGAGAAGTATCCGGACAGAATACCGGTCA  129
            ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct  277  AAAAGAGACAAGCTGAAGCAGCACGTATCAGGGAGAAGTATCCAGACAGAATACCAGTCA  336

Query  130  TAGTCGAAAGAGCCGAGAAGAGTGATGTCCCTGATATTGATAAGAAAAAGTACTTGGTCC  189
            | ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct  337  TTGTCGAAAGAGCCGAGAAGAGTGATGTCCCGGATATTGATAGGAAAAAGTACTTGGTCC  396

Query  190  CAGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTACGGAAGCGGATCAAGCTCAGTC  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  397  CAGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTACGGAAGCGGATCAAGCTCAGTC  456

Query  250  CCGAGAAAGCTATCTTCATTTTTGTCAAGAACATTCTACCACCAACTGCGGCCATAATGT  309
            |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  457  CCGAGAAAGCCATCTTCATTTTTGTCAAGAACATTCTACCACCAACTGCGGCAATAATGT  516

Query  310  CTGCGATTTATGAAGAGCACAAAGATGAAGACGGGTTTCTATACATGAGTTACAGTGGTG  369
            |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  517  CTGCAATTTATGAAGAGCACAAAGACGAAGACGGGTTTCTATACATGAGTTACAGTGGTG  576

Query  370  AGAACACATTCGGTATCATCTTCTAATGCGCTTGGAACGTGTGGATGCATCATATTATCA  429
            ||||||| ||||| ||| |||||||||||||||||||  ||||||||||||| |||||||
Sbjct  577  AGAACACGTTCGGGATCTTCTTCTAATGCGCTTGGAATATGTGGATGCATCAGATTATCA  636

Query  430  ATGTACAGTCTGTCTATATCTCTGCTTGTCTCTAGTTTTCATGACACTGGACGAAACTTT  489
            ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct  637  ATGTACAGTCTGTCTATTTCTCTGCTTGTCTCTAGTTTTCATGACATTGGACGAAGCTTT  696

Query  490  TGAAACTTGCAT  501
            ||||||||||||
Sbjct  697  TGAAACTTGCAT  708


 Score =  110 bits (59),  Expect = 2e-23
 Identities = 66/69 (96%), Gaps = 2/69 (3%)
 Strand=Plus/Plus

Query  1    TCTCTTCTCTGTTTCTCTCTCGCAGCGTAA--TCATGGCGATTAGCTCCTTCAAGCATGA  58
            ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||
Sbjct  74   TCTCTTCTCTGTTTCTCTCTCGCAGCGAAAAATCATGGCGATTAGCTCCTTCAAGCATGA  133

Query  59   ACATCCTCT  67
            |||||||||
Sbjct  134  ACATCCTCT  142



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5