BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480191
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05755.1 | Symbols: | Nodulin MtN21 /EamA-like transporter ... 2032 0.0
AT2G05753.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 119 8e-26
> AT2G05755.1 | Symbols: | Nodulin MtN21 /EamA-like transporter
family protein | chr2:2170883-2173760 FORWARD LENGTH=1342
Length=1342
Score = 2032 bits (1100), Expect = 0.0
Identities = 1260/1336 (94%), Gaps = 16/1336 (1%)
Strand=Plus/Plus
Query 3 GTTTTCGTAGCCATGGCTTCTTCCTCTCCGGAGACCAGAATCACCGACGAACACCTCGCC 62
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||
Sbjct 11 GTTTTCGTAGCCATGGCTTCTTCGTCTCCGGAGACCAGAATCGCCGACGAACACCTCTCC 70
Query 63 CTTGAGCTTACCGTTCGCGATCTAGAATCTCCGGCGTTAG-AAGACGCCTCCTCCGCCCC 121
|||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 71 CTTGAGCTTACCGTTCGCGATCTAGAATCTACGGCGTTAGAAAG-CGCCTCCTCCGCCCC 129
Query 122 TGACTCATCTTCCGACGAAATCATCCCTCTCCTGAATCAAAACCAAAGACCTAGAATCAA 181
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 130 TGAATTATCTTCCGACGAAATTATCCCTCTCCTGAATCAAAACCAAAGACCTAGAATCAA 189
Query 182 CATCTTCTCCGCTTCCTATACTCGACGCAAACCAAGAGAGCAAGTGATTAAAGTAACAGA 241
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct 190 CATCTTCTCCGCCTCCTACACTCGACGCAAACCAAGTGAGCAAGTGATTAAAGTGACTGA 249
Query 242 AACTGAGATATCACCTGTAACTCAGTTTTCTTCATGGATTTGGAGTGGTTCTCGTTACTC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AACTGAGATATCACCTGTAACTCAGTTTTCTTCATGGATTTGGAGTGGTTCTCGTTACTC 309
Query 302 TGGCTTACTGTGTATGGTGTTGTCATCGACACTGTATCTCATCATGGAGTTAGTTTCAGA 361
||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 310 TGGCTTACTGTGTATGGCATTGTCATCTACATTGTATCTGATCATGGAGTTAGTTTCAGA 369
Query 362 TACTTTTTCTGTTCAGCCGATTCCTTTGTTTGAGACCGCGTTCATGAGATGCACAATTAT 421
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TACTTTTTCTGTTCAGCCAATTCCTTTGTTTGAGACCGCGTTCATGAGATGCACAATTAT 429
Query 422 CTTGATACTGTCATACCTTTGGTTGAAAAGAATTGGACAACCAATTTTTGGACCTGCGCA 481
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 430 CTTGATACTGTCATACCTTTGGTTGAAAAGAATTGGGCAACCGATATTTGGACCTGCTCA 489
Query 482 TGCCAGGAAGCTTTTGGTTTCAAGAGCCCTTGTGGGTTACCTTTCATTGTTTAGTTTCAT 541
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 490 TGCAAGGAAGCTTTTGGTTTCAAGAGCCCTCGTGGGTTATCTTTCATTGTTTAGTTTCAT 549
Query 542 CTTTAGCATTCAAATGTTACCGTTGTCCCAAGCTATTGTACTAAGCTTCTTGAATCCAAT 601
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CTTTAGCATTCAAATGTTGCCGTTGTCCCAAGCTATTGTACTAAGCTTCTTGAATCCAAT 609
Query 602 TATGGCTTCCATTGCAGCACGTGTTGTTATGCATGAGAAGTTGAAAATAACTGATATCGG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 610 TATGGCTTCCATTGCAGCACGTGTTGTTATGCATGAGAAGTTGAAAATAACTGATATTGG 669
Query 662 AGGTCTTGCTTGCAGTTTCTTTGGCGTGCTTTTTATTTTTGGCCCAACACTTACTGTCCA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 AGGTCTTGCTTGCAGTTTCTTTGGCGTGCTTTTTATTTTTGGCCCAACACTTACTGTCCA 729
Query 722 AGTTGGATCAGAAGGAACGAATGAAAATCTTAAAGGAAACCATCATATTTATGCATTCTG 781
|||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 730 AGTTGGATTAGAAGGAAAGAATGAAAACCTTAAAGGAAACCATCATATTTATGCGTTCTT 789
Query 782 GTTGGGTTTATTTTCATCAATCACTGGAGGAATCACCTATTGTCTCATAAAGGCAGCTGC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 790 GTTGGGTTTATTTTCATCAATCACTGGAGGAATCACCTATTGTCTCATAAAGGCAGCCGC 849
Query 842 TAAAGCATCGGAACAGCCAGTGATTACTGTCTTCTCGTTTGGTTTGGTAGCTTGCCCCGC 901
||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 850 TAAAGCATCGGAACAGCCAGTGATTACTGTCCTCTCTTTTGGCTTGGTAGCTTGCCCCGC 909
Query 902 CGCAGCAATTTGCATGTTTTCCTTCGAGAGCTTTGTGCTGCCAGCGTTTGACACGCTCAT 961
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 910 TACAGCAATTTGCATGTTTTCCTTCGAGAGCTTCGTGCTGCCAGCATTTGACACGCTCGT 969
Query 962 TAGCATGATTGTGCTAGGGTTGCTAGCGTTTTGCGCAGAGGTACTTTTGGCACGTGGTCT 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TAGCATGATTGTGCTAGGGTTGCTAGCGTTTTGCGCAGAGGTACTTTTGGCACGTGGTCT 1029
Query 1022 TCAGCTTGAGAAAATCAGCAAAGCGGCAAACGTATTGTACATCGAGGTGGTGTTATCGCA 1081
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1030 TCAGCTTGAGAAAATCAGCAAAGCTGCTAACGTATTGTACATCGAGGTGGTTTTATCGCA 1089
Query 1082 GTTATGGATAGTCAGCACGGGAAAAGCAGGATCACCAGGTTTGTTTAGCCGGCTTGTTGG 1141
||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1090 GTTATGGTTAGTCAGCACGGGAAAAACAGGATCGCCAGGTTTGTTTAGCCGGCTTGTTGG 1149
Query 1142 ATGTTTGCTCGTTCTCATATCGGTAAGCTACACAGTTTACATGGGACCTGCCAAAGATAC 1201
||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1150 GTGTTTGCTCATTCTCCTATCGGTAGGCTACACAGTTTACATCGGACCTGCCAAAGATAC 1209
Query 1202 CGAGTCACCAATACCGTAGAAGTGTAATTCCATTCtttt-tcattttttGACTACACTTC 1260
|||||| ||||||| ||||||||| | |||||||||| ||||||||| |||| ||||
Sbjct 1210 TGAGTCATCAATACCATAGAAGTGT--T-CCATTCTTTTCTCATTTTTTTACTATGCTTC 1266
Query 1261 TTGTTTGATGCAATGCAAAC-C-A-A------ATTTCACATTT-TGAGTATAAAATTTCA 1310
|||||||| ||||||||||| | | | ||||||||||| ||||||||||||||||
Sbjct 1267 TTGTTTGAGGCAATGCAAACGCCACACTCCCCATTTCACATTTCTGAGTATAAAATTTCA 1326
Query 1311 TTGATCTTCGTTTGCC 1326
||||| ||||||||||
Sbjct 1327 TTGATTTTCGTTTGCC 1342
> AT2G05753.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 0 Blast hits
to 0 proteins in 0 species (source: NCBI BLink). | chr2:2171390-2171936
REVERSE LENGTH=303
Length=303
Score = 119 bits (64), Expect = 8e-26
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 296 TTACTCTGGCTTACTGTGTATGGTGTTGTCATCGACACTGTATCTCATCATGGAGTTAGT 355
||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||
Sbjct 303 TTACTCTGGCTTACTGTGTATGGCATTGTCATCTACATTGTATCTGATCATGGAGTTAGT 244
Query 356 TTCAGATACTTTTTCTGTTCAG 377
||||||||||||||||| ||||
Sbjct 243 TTCAGATACTTTTTCTGGTCAG 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5