BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480192
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05760.1 | Symbols: | Xanthine/uracil permease family prote... 2477 0.0
> AT2G05760.1 | Symbols: | Xanthine/uracil permease family protein
| chr2:2180919-2183904 FORWARD LENGTH=1816
Length=1816
Score = 2477 bits (1341), Expect = 0.0
Identities = 1598/1718 (93%), Gaps = 33/1718 (2%)
Strand=Plus/Plus
Query 37 ATGGCGGAGATTAGTCATCCTCCAATGGAACAGCTTCAAGACCTTGAATATTGCATCGAC 96
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATGGCGGAGATAAGTCATCCTCCAATGGAACAGCTTCAAGACCTTGAATATTGCATCGAC 119
Query 97 TCTAATCCTCCTTGGCCTGAAACGGTGTTACTAGCATTCCAAAACTACATTCTAACGCTT 156
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||| ||||
Sbjct 120 TCTAACCCTCCTTGGCCCGAGACGGTGTTACTAGCATTCCAAAACTACATACTAATGCTT 179
Query 157 GGAACAAGTGCTTTTATACCCGCATTGCTCGTCCCTGCTATGGGTGGCTCTGATGGGGAC 216
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 180 GGAACAAGTGCTTTTATACCCGCATTGCTCGTTCCAGCTATGGGTGGCTCTGATGGGGAC 239
Query 217 AGGGCGCGGGTTATACAGACTTTACTCTTTGTAGCTGGTATCAAAACACTTCTTCAAGCT 276
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAGCGCGGGTTATACAGACATTACTCTTTGTAGCTGGTATCAAAACACTTCTTCAAGCT 299
Query 277 CTTTTTGGTACGAGGTTGCCTGCTGTTGTTGGAGGCTCTTTTGCTTATGTTGTCCCTATT 336
|| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CTCTTTGGTACAAGGTTGCCTGCTGTTGTTGGAGGCTCTCTTGCTTATGTTGTCCCTATT 359
Query 337 GCTTACATTATCAATGACTCTTCTTTGCAAAAGATTTCCAATGATCATGAGAGATTTATT 396
||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 360 GCTTATATCATCAATGACTCTTCTTTGCAAAAGATATCTAATGATCATGAGAGATTTATT 419
Query 397 CATACGATGCGTGCTATACAAGGGGCGTTGATTGTAGCATCGAGCATACAGATTATTCTT 456
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 CATACAATGCGTGCTATACAAGGGGCGTTGATTGTAGCATCAAGCATACAGATTATTCTA 479
Query 457 GGTTACAGCCAAGTATGGGGACTTTTCTCAAGGTTTTTCAGTCCTCTAGGAATGGCACCG 516
|| || |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 480 GGATATAGCCAAGTTTGGGGTCTTTTCTCAAGGTTCTTCAGTCCTCTAGGAATGGCACCG 539
Query 517 GTTGTTGGATTAGTAGGTCTCGGGATGTTTCAGCGAGGAGTTCCTCAGCTCGGGAACTGC 576
||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GTTGTCGGATTGGTTGGTCTCGGGATGTTTCAGCGAGGATTTCCTCAGCTCGGGAACTGC 599
Query 577 ATTGAGATTGGACTACCGATGTTATTGCTTGTCATCGGACTAACCCAATATCTAAAACAT 636
|| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 600 ATCGAGATTGGACTACCGATGCTATTGCTTGTCATTGGACTAACCCAATATCTAAAACAT 659
Query 637 GTCAGACCATTTAAAGATGTCCCAATCTTTGAAAGATTTCCGATATTGATCTGTG-TAGC 695
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 660 GTTAGACCATTTAAAGATGTCCCAATCTTTGAAAGATTTCCGATATTGATCTGTGTTA-C 718
Query 696 AATTGTTTGGATCTATGCCGTAATTCTGACTGCAAGTGGAGCTTACAGAGGCAAACCATC 755
||||||||||||||| || ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 719 AATTGTTTGGATCTACGCTGTAATTCTGACCGCAAGTGGTGCTTATAGAGGCAAACCATC 778
Query 756 ACTCACACAGCATAGTTGTCGAACAGACAAAGCAAATCTTATATCCACAGCTCCATGGGT 815
||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||| |
Sbjct 779 ACTTACACAGCATAGTTGTCGAACAGACAAAGCTAATCTTATTTCAACAGCTCCATGGTT 838
Query 816 TAAGTTTCCATACCCACTCCAATGGGGGCCTCCAACATTTTCAGTAGGCCATTCGTTTGC 875
||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 839 TAAGTTTCCATACCCTCTCCAGTGGGGACCTCCTACATTTTCAGTAGGCCATTCGTTTGC 898
Query 876 TATGATGTCTGCAGTTCTTGTATCCATGATCGAGTCAACTGGAGCTTACATGGCGGCTTC 935
|||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||
Sbjct 899 TATGATGTCTGCGGTTCTTGTATCCATGGTCGAGTCTACTGGAGCTTACATTGCGGCTTC 958
Query 936 AAGATTAGCCATAGCTACGCCGCCTCCTGCTTATGTATTGAGTAGAGGCATTGGATGGCA 995
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGATTAGCTATAGCCACGCCGCCTCCTGCTTATGTATTGAGTAGAGGCATTGGATGGCA 1018
Query 996 GGGCATTGGTGTGTTGCTTGATGGTCTATTCGGAACAGGCACAGGTTCTACTGTTTTGGT 1055
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| | ||
Sbjct 1019 GGGCATTGGTGTATTGCTTGATGGTCTATTTGGAACAGGCACAGGCTCTACTGTTCTAGT 1078
Query 1056 TGAAAATGTAGGACTTCTTGGGTTAACAAGAGTTGGTAGCCGTCGTGTTGTTCAAGTATC 1115
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1079 TGAAAATGTAGGACTTCTAGGGTTAACAAGAGTTGGTAGTCGTCGTGTTGTTCAAGTATC 1138
Query 1116 TGCAGGCTTCATGATTCTATTCTCAATATTTGGCAAATTCGGAGCTGTTTTTGCATCGAT 1175
|||||||||||||||| | ||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 1139 TGCAGGCTTCATGATTGTTTTCTCAACATTGGGCAAATTCGGAGCTGTTTTCGCATCGAT 1198
Query 1176 ACCAGTCCCGATATACGCAGCATTGCACTGCATCCTCTTCGGCCTTGTTGCTGCGGTTGG 1235
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACCAGTCCCGATATACGCAGCGTTGCACTGCATCCTCTTCGGCCTTGTTGCTGCGGTTGG 1258
Query 1236 TCTCTCATTTCTTCAGTTCACAAACATGAACTCCATGAGAAACTTAATGATCACCGGTCT 1295
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1259 TCTCTCATTTCTTCAGTTCACAAACATGAACTCAATGAGAAACCTAATGATCACCGGACT 1318
Query 1296 TTCGCTCTTTCTCGGAATCTCCATACCGCAGTTCTTCGTTCAGTACTGGGACGCTAGACA 1355
||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 1319 TTCGCTCTTTCTCGGAATCTCCATACCTCAATTCTTCGCTCAGTACTGGGACGCTAGACA 1378
Query 1356 TTACGGGCTAGTACACACAAACGCAGGATGGTTCAACGCTTTCTTGAACACAATATTCAT 1415
|||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1379 TTACGGATTAGTTCACACAAACGCAGGATGGTTCAACGCATTCTTGAACACGTTATTCAT 1438
Query 1416 GTCACCAGCAACAGTTGGTCTAATCATTGCGGTATTCATGGACAACACAATGGAAGTAGA 1475
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1439 GTCACCAGCAACAGTTGGTCTAATCATTGCAGTATTCATGGACAACACAATGGAAGTAGA 1498
Query 1476 GAGATCAAAGAAAGACAGAGGCATGCCTTGGTGGGTCAAGTTTAGAACTTTCAGAGGTGA 1535
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GAGATCAAAGAAAGATAGAGGCATGCCTTGGTGGGTCAAGTTTAGAACTTTCAGAGGTGA 1558
Query 1536 TAATCGTAATGAAGAGTTCTACACTTTGCCTTTTAACCTCAACAGATTCTTCCCTCCTAC 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TAATCGTAATGAAGAGTTCTACACTTTGCCTTTTAACCTCAACAGATTCTTCCCTCCTAC 1618
Query 1596 ---GT-AGTA--CTT--T---TA-T-----T--GATT--T--ATGATTATTCTTTTTTGG 1632
|| |||| ||| | || | | |||| | |||||||||||||||||
Sbjct 1619 ATAGTTAGTAAACTTAATCAATAATAAAACTTTGATTGGTTTATGATTATTCTTTTTTGA 1678
Query 1633 TTA-GTGGTCTCTAATTTATGACCCTCGTTGGAAGTAGTTTTTTACTTCAACA---A-TT 1687
||| |||||||||||||||| ||| ||||||||||||| || ||||||||| | ||
Sbjct 1679 TTAAGTGGTCTCTAATTTATAACCATCGTTGGAAGTAGATT---ACTTCAACATTCAATT 1735
Query 1688 TCATCTCttttttttttCTGTAGATTCAATAAAGATCA 1725
| ||| ||||||||| ||||||||||||||||||||||
Sbjct 1736 TTATCACTTTTTTTTGTCTGTAGATTCAATAAAGATCA 1773
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 TGTTCATCGGAAAAGGAGATTTTGTTTT 28
||||||||||||||||||||||||||||
Sbjct 4 TGTTCATCGGAAAAGGAGATTTTGTTTT 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5