BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480197
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05830.1 | Symbols: | NagB/RpiA/CoA transferase-like superf... 2141 0.0
> AT2G05830.1 | Symbols: | NagB/RpiA/CoA transferase-like superfamily
protein | chr2:2229602-2232106 FORWARD LENGTH=1549
Length=1549
Score = 2141 bits (1159), Expect = 0.0
Identities = 1296/1361 (95%), Gaps = 14/1361 (1%)
Strand=Plus/Plus
Query 1 GTCGGTTGGTGCGTTTCACGCCGGCTTGGTGCTCTAGG---C-ATCTGATTCTCACTGT- 55
||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 1 GTCGGTTGGTGTGTTTCACGCCGGCTTGGTGCTCTAGGCATCTATCTGATTCTCACTATC 60
Query 56 -C-ACTGACCCAAATCTTTTTCCTTTTGTTCCTCTTTCTCTAAACCAATCTTTGAAACAA 113
| |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ACTACTGACACAAATCCTTTTCCTTTTGTTCCTCTTTCTCTAAACCAATCTTTAAAACAA 120
Query 114 CTTATTCCTCTTCAAGATTACTCC-ACAAGTCCAT-CCATGTCTAGTGAAGGAGACACGA 171
||||||| ||||||||||| |||| |||||||| | ||||||| | |||||||||||||
Sbjct 121 CTTATTCGTCTTCAAGATTTCTCCAACAAGTCC-TACCATGTCCGGCGAAGGAGACACGA 179
Query 172 CCCTCAAAGCTATCTGCTACAAGCCTGGCTCTCTTCAATTACTCGATCAGAGGAAGCTTC 231
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 180 CCCTCAAAGCTATCTGTTACAAGCCTGGCTCTCTCCAGTTACTCGATCAGAGGAAGCTTC 239
Query 232 CTTTAGAGACCATTTACTTAGAGATTCGTGATTCTTCAGATGGATGGAGTGCTATTCAGG 291
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 CTTTAGAGACTATTTACTTAGAGATTCGTGATGCTTCAGATGGATGGAGTGCTATTCAGG 299
Query 292 AAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCTTTGGCTGTTG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCTTTGGCTGTTG 359
Query 352 AAGTTTTCAACTTTAATGGTTTTGATGGATCAGCTGCAGATGCTGTTGCTTTTCTTGAGA 411
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 AAGTTTTCAACTTTCATGGTTTTGATGGATCAGCTTCAGATGCTGTTGCTTTTCTTGAGA 419
Query 412 AGAAGTTGGATTATTTAGTGTCAAGTCGTCCAACAGCAGTTAATCTTGCAGATGCTGCAT 471
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 420 ACAAGTTGGATTATTTAGTGTCAAGCCGTCCAACAGCAGTTAATCTTGCAGATGCTGCTT 479
Query 472 TGAAACTTAAACATGTTATAGCAAAGGCCTTGGCTATTGCCACTGAACCCAAATCTATTT 531
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||
Sbjct 480 TGAAACTTAAACATGTTATAGCAAAGGCCTTGGCTACTGCCACCGAAGCCAAATCCATTT 539
Query 532 TTAAGGTATATATTGAAGCG-GCTGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAA 590
| |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 540 TCAAGGCATATATTGAAGCTAG-TGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAA 598
Query 591 GCAATAGGAACCTTTGGTTCAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTT 650
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTT 658
Query 651 TCTGTTCTGACCCATTGCAACACTGGCAGCCTTGCTACTGCTGGATATGGTACTGCCCTC 710
|||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 659 TCTGTTTTGACCCATTGCAACACTGGCAGCCTTGCTACCGCCGGATATGGTACTGCCCTC 718
Query 711 GGTGTCATCCGCGCACTCCACACTCAAGGAGTCTTAGAAAGAGCATACTGCACAGAAACT 770
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 719 GGTGTCATCCGTGCACTCCATACTCAAGGAATCTTAGAAAGAGCATACTGCACAGAAACT 778
Query 771 CGTCCATTCAATCAAGGATCGAGGCTTACAGCGTTTGAGTTAGTGCATGAGAAAATCCCT 830
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 779 CGTCCATTTAATCAAGGATCGAGGCTTACAGCGTTTGAGTTGGTGCATGAGAAAATCCCT 838
Query 831 GCAACTCTCATTGCAGACTCAGCTGCAGCTGCACTGATGAAAGATGGTCGTGTCGATGGT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 839 GCAACTCTCATTGCAGACTCAGCTGCAGCTGCACTGATGAAAGATGGTCGTGTTGATGGT 898
Query 891 GTCATTGTTGGAGCTGATCGCGTGGCTTCAAATGGTGATACTGCTAACAAGATTGGGACT 950
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 899 GTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGGCGATACTGCTAACAAGATTGGGACT 958
Query 951 TACAGTCTCGCCCTGTGCGCAAAACATCACGGGATCCCATTTTATGTTGCTGCACCTCTT 1010
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TACAGTCTCGCCTTGTGCGCAAAACATCACGGGATCCCATTTTATGTTGCTGCACCTCTT 1018
Query 1011 ACCTCAGTTGATCTGTCACTTTCATCCGGGAAAGAAATCGTAATAGAGGAAAGATCTCCA 1070
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 ACCTCAGTTGATCTGTCACTTTCATCCGGGAAAGAAATCGTGATAGAGGAAAGATCTCCA 1078
Query 1071 AAGGAGTTGCTGCACACACATGGAGGACTTGGTGAACGCATTGCAGCACCAGGGATCTCA 1130
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAGGAGTTGATGCACACACACGGAGGACTTGGTGAACGCATTGCAGCACCAGGGATCTCA 1138
Query 1131 GTTTGGAACCCAGCTTTTGATGTGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAG 1190
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GTTTGGAACCCAGCTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAG 1198
Query 1191 AAGGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCAAGAAG 1250
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AAAGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCAAGAAG 1258
Query 1251 ATGACAGGAAACTCATCTGGTTGAAGTTAGAGTCAGCATTGCGGCTTGCGGATGTTCCCC 1310
|| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1259 ATAACAGGAAACTCATCTCGTTGAAGTTAGAGTCAGCATTGCGACTTGCGGATGTTCCCC 1318
Query 1311 TCTCT--ATATACTTGCAACAAAGCAAATTACTTTGTAATG 1349
||||| ||||||||||||||||||||||||||||||||||
Sbjct 1319 TCTCTCTATATACTTGCAACAAAGCAAATTACTTTGTAATG 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5