BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480202
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13370.1 | Symbols: | Histone superfamily protein | chr1:45... 636 0.0
AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28... 625 1e-178
AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:34... 409 2e-113
AT1G19890.1 | Symbols: ATMGH3, MGH3 | male-gamete-specific hist... 342 2e-93
AT4G40030.2 | Symbols: | Histone superfamily protein | chr4:18... 331 3e-90
AT1G75610.1 | Symbols: | pseudogene, histone H3, identical to ... 298 3e-80
> AT1G13370.1 | Symbols: | Histone superfamily protein | chr1:4587780-4588613
REVERSE LENGTH=648
Length=648
Score = 636 bits (344), Expect = 0.0
Identities = 399/426 (94%), Gaps = 2/426 (0%)
Strand=Plus/Plus
Query 1 TTCTTGAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAATCACACGGAGGAAAAG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 78 TTCTTGAAGAAGCCATGGCTCGTACGAAGCAATCCGCGAGAAAATCACACGGAGGAAAAG 137
Query 61 CTCCAAGGAAGCAACTTGCTACTAAGGCTGCGAGGAAATCTGCGCCGAGTACCGGTGGAG 120
|||| | |||||| || ||||| ||||| || ||||||||||| |||| |||||| ||||
Sbjct 138 CTCCGACGAAGCAGCTCGCTACCAAGGCGGCAAGGAAATCTGCACCGACTACCGGAGGAG 197
Query 121 TCAAGAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACC 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TCAAGAAACCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACC 257
Query 181 AGAAGAGCACAGAGTTGTT-AATCCGTAAACTTCCATTTCAGCGTCTTGTTCGTGAAATC 239
| ||||||||||||||||| || ||||||||||||||| || ||||||||||||||||||
Sbjct 258 AAAAGAGCACAGAGTTGTTGAA-CCGTAAACTTCCATTCCAACGTCTTGTTCGTGAAATC 316
Query 240 GCCCAAGATTTCAAGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAA 299
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 317 GCTCAAGATTTCAAGACGGATCTGAGATTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAA 376
Query 300 GCTGCGGAGGCATATTTGGTGGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCA 359
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 377 GCTGCGGAGGCATATTTGGTTGGTTTGTTTGAAGACACAAATCTCTGTGCCATTCATGCA 436
Query 360 AAGAGGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGT 419
||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 437 AAGAGGGTTACCATTATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGCAGAGCGT 496
Query 420 GCTTAG 425
||||||
Sbjct 497 GCTTAG 502
> AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28390665-28391493
FORWARD LENGTH=531
Length=531
Score = 625 bits (338), Expect = 1e-178
Identities = 396/425 (93%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 1 TTCTTGAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAATCACACGGAGGAAAAG 60
||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 75 TTCTTGACGAAGCAATGGCTCGTACGAAGCAAACTGCAAGAAAATCACACGGAGGAAAAG 134
Query 61 CTCCAAGGAAGCAACTTGCTACTAAGGCTGCGAGGAAATCTGCGCCGAGTACCGGTGGAG 120
|||| |||| | || ||||| ||||| ||||||||||||||||||| ||| || ||||
Sbjct 135 CTCCGAGGACTCTGCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACTGGAGGAG 194
Query 121 TCAAGAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACC 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 195 TCAAGAAACCTCACCGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACC 254
Query 181 AGAAGAGCACAGAGTTGTTAATCCGTAAACTTCCATTTCAGCGTCTTGTTCGTGAAATCG 240
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 255 AGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAACGTCTTGTTCGTGAAATCG 314
Query 241 CCCAAGATTTCAAGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAAG 300
| ||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 315 CTCAAGATTACAAGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAG 374
Query 301 CTGCGGAGGCATATTTGGTGGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCAA 360
|||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 375 CTGCTGAAGCATATTTGGTTGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCCA 434
Query 361 AGAGGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTG 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AGAGGGTTACGATCATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTG 494
Query 421 CTTAG 425
|||||
Sbjct 495 CTTAG 499
> AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:3472405-3473466
REVERSE LENGTH=714
Length=714
Score = 409 bits (221), Expect = 2e-113
Identities = 355/421 (84%), Gaps = 4/421 (1%)
Strand=Plus/Plus
Query 6 GAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAAT-CACACGGAGGAAAAGCTCC 64
|||||| | ||||||||||| ||||||||||| || |||| ||| |||||| ||||||||
Sbjct 109 GAAGAAACAATGGCTCGTACCAAGCAAACCGCTAGGAAATCCAC-CGGAGGTAAAGCTCC 167
Query 65 AAGGAAGCAACTTGCTACTAAGGCTGCGAGGAAATCTGCGCCGAGTACCGGTGGAGTCAA 124
|||||||| ||||| || ||||| ||||||||||| || || | ||||| ||||||||
Sbjct 168 CAGGAAGCAGCTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAA 227
Query 125 GAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAA 184
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 228 GAAGCCTCACCGTTACCGTCCAGGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAA 287
Query 185 GAGCACAGAGTTGTTAATCCGTAAACTTCCATTTCAGCGTCTTGTTCGTGAAATCGCCCA 244
||| || || ||||| ||||| || ||||| || |||||||| ||||| ||||| || ||
Sbjct 288 GAGTACTGAATTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCA 347
Query 245 AGATTTCAAGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAAGCTGC 304
|| ||||||||||||||||| || ||||| ||||| |||||||| |||||||| || ||
Sbjct 348 GGACTTCAAGACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGC 407
Query 305 GGAGGCATATTTGGTGGGTTTGTTT-GAAGATACAAATCTGTGTGCCATTCATGCAAAGA 363
|||||||| | || || | ||| || ||||| ||||| || || ||||| || ||||
Sbjct 408 TGAGGCATACCTAGTTGGACT-TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGA 466
Query 364 GGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 423
|||||||||| |||||||| || |||||||||| ||||| ||||||||||| |||||||
Sbjct 467 GGGTTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGAATTCGTGGAGAACGTGCTT 526
Query 424 A 424
|
Sbjct 527 A 527
> AT1G19890.1 | Symbols: ATMGH3, MGH3 | male-gamete-specific histone
H3 | chr1:6905034-6906018 FORWARD LENGTH=640
Length=640
Score = 342 bits (185), Expect = 2e-93
Identities = 343/418 (82%), Gaps = 15/418 (4%)
Strand=Plus/Plus
Query 15 ATGGCTCGTACGAAGCAAACCGCGAGAAAATCACAC-GGAGGAAAAGCTCCAAGGAAGCA 73
||||| |||||||||||||| ||||| ||||| || || ||||||| |||||||||| |
Sbjct 1 ATGGCACGTACGAAGCAAACTGCGAGGAAATC-TACTGGTGGAAAAGGTCCAAGGAAGGA 59
Query 74 ACTTGCTACTAAGGCTGCGAGGAAATCTGCGCCGA--GTACC--GGTGGAGTCAAGAAAC 129
||| ||||| ||||| ||||||||| || | ||| ||||| |||||||||||||
Sbjct 60 ACTCGCTACCAAGGCGGCGAGGAAAACT-AGACGACCGTACCGTGGTGGAGTCAAGAGGG 118
Query 130 CTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCA 189
||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 119 CTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAGTA 178
Query 190 CAGAGTTGTTAATCCGTAAACTT-CCATTTC-AGCGTCTTGTTCGTGAAATCGCCCAAGA 247
| || ||||| ||||| ||| || || |||| | || |||||||||||||||||||||||
Sbjct 179 CCGACTTGTTGATCCGCAAA-TTGCC-TTTCCAACGACTTGTTCGTGAAATCGCCCAAGA 236
Query 248 TTTCAAGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAAGCTGCGGA 307
||| ||| |||| | || ||||| ||||| || ||| | || |||||||| || || ||
Sbjct 237 TTTTAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTGCTCGCACTTCAAGAGGCAGCCGA 296
Query 308 GGCATATTTGGTGGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGC-AAAGAGGG 366
||||| |||||||| ||||| ||||| || ||| ||||||| ||||| || ||| ||||
Sbjct 297 AGCATACTTGGTGGGGTTGTTCGAAGACACGAATTTGTGTGCGATTCACGCCAAA-AGGG 355
Query 367 TTACGATAATG-CCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 423
||||||| ||| || || || |||| ||||| ||| | |||||||| || |||||||
Sbjct 356 TTACGATCATGTCC-AAGGACATTCAGTTGGCCAGACGCATTCGTGGGGAACGTGCTT 412
> AT4G40030.2 | Symbols: | Histone superfamily protein | chr4:18555618-18556878
REVERSE LENGTH=768
Length=768
Score = 331 bits (179), Expect = 3e-90
Identities = 310/374 (83%), Gaps = 6/374 (2%)
Strand=Plus/Plus
Query 15 ATGGCTCGTACGAAGCAAACCGCGAGAAAAT-CACACGGAGGAAAAGCTCCAAGGAAGCA 73
||||||||||| ||||||||||| | || | ||| |||||| |||||||||||||||||
Sbjct 136 ATGGCTCGTACCAAGCAAACCGCTCGTAAGTCCAC-CGGAGGTAAAGCTCCAAGGAAGCA 194
Query 74 ACTTGCTACTAAGGCTGCGAGGAAATCTGCGCCGAGTACCGGTGGAGTCAAGAAACCTCA 133
|||||||||||||||||| | |||||||| || | ||| ||||||||||||||||| ||
Sbjct 195 ACTTGCTACTAAGGCTGCTCGTAAATCTGCACCAACTACTGGTGGAGTCAAGAAACCACA 254
Query 134 CCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGA 193
||||||||||||||||| || ||||| ||||| || ||||| ||||||||||| || ||
Sbjct 255 TCGTTACCGTCCTGGAACTGTTGCTCTCCGTGAAATCCGTAAGTACCAGAAGAGTACTGA 314
Query 194 GTTG-TTAATCCGTAAACTTCCATTTCAGCGTCTTGTTCGTGAAATCGCCCAAGATTTCA 252
|||| ||| || | ||||| ||||||||| | || || ||||| || || ||||||||||
Sbjct 315 GTTGCTTA-TCAGGAAACTGCCATTTCAGAGGCTAGTCCGTGAGATTGCTCAAGATTTCA 373
Query 253 AGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAAGCTGCGGAGGCAT 312
|||| ||| || | ||||||||||| || || ||||| || || |||||||| || ||||
Sbjct 374 AGACTGATTTGCGTTTCCAGAGCCATGCTGTCTTAGCTCTCCAGGAAGCTGCAGAAGCAT 433
Query 313 AT-TTGGTGGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACG 371
|| ||| ||| | | |||||||| || || || |||||||||||||| ||| | || ||
Sbjct 434 ATCTTGTTGG-TCTCTTTGAAGACACTAACCTTTGTGCCATTCATGCCAAGCGTGTGACC 492
Query 372 ATAATGCCTAAAGA 385
|||||||| |||||
Sbjct 493 ATAATGCCCAAAGA 506
> AT1G75610.1 | Symbols: | pseudogene, histone H3, identical to
histone H3.2 from Medicago sativa GB:AAB36495 GI:488571, Histone
H3.2, minor Lolium temulentum SP|P11105, histone H3 Tortula
ruralis GI:4574208; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4; blastp match of 96% identity and 6.6e-54
P-value to GP|6006364|dbj|BAA84794.1||AP000559 EST D15300(C0425)
corresponds to a region of the predicted gene.~Similar
to histone H3 (AB015760) {Oryza sativa (japonica cultivar-group)}
| chr1:28392729-28393312 FORWARD LENGTH=584
Length=584
Score = 298 bits (161), Expect = 3e-80
Identities = 169/173 (98%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 253 AGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAAGCTGCGGAGGCAT 312
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 412 AGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCGGAGGCAT 471
Query 313 ATTTGGTGGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 372
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 472 ATTTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 531
Query 373 TAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTTAG 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTTAG 584
Score = 154 bits (83), Expect = 8e-37
Identities = 89/92 (97%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 163 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTAATCCGTAAACTTCCATTTCAGC 222
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 223 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAAC 282
Query 223 GTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 254
||||||||||||||||||||||||||||||||
Sbjct 283 GTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 314
Score = 124 bits (67), Expect = 6e-28
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 85 AGGCTGCGAGGAAATCTGCGCCGAGTACCGGTGGAGTCAAGAAACCTCACCGTTACCGTC 144
|||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 62 AGGCGGCGAGGAAATCTGCGCCAACTACCGGTGGAGTCAAGAAACCTCACCGTTACCGTC 121
Query 145 CTGGAACCGTCGCTCTTCG-TGAGATTCG 172
| ||||||||||||||||| | || ||||
Sbjct 122 CCGGAACCGTCGCTCTTCGGTAAGTTTCG 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5