BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480210
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06010.1 | Symbols: ORG4 | OBP3-responsive gene 4 | chr2:233... 1301 0.0
> AT2G06010.1 | Symbols: ORG4 | OBP3-responsive gene 4 | chr2:2336814-2338902
FORWARD LENGTH=1031
Length=1031
Score = 1301 bits (704), Expect = 0.0
Identities = 822/877 (94%), Gaps = 16/877 (2%)
Strand=Plus/Plus
Query 1 GGGATAAAG-TTGAGCGGTGGATTTTGTATGGAGCCGCCGAGTTCGAGAGCGGAGGAACC 59
||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GGGAT-AAGTTTGAGCGGTGGATTTTGTATGGAGCCGCCGAGTTCGAGACCGGAGGAACC 59
Query 60 TCCGTCATGGGAGGACCTTTACAAAATCAATCTAATGCCGTCGGAGCTATTCGTCAAGTT 119
||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||
Sbjct 60 TCCGTCATGGGAGGACCTTTACAAAATCAATCTTATGCCATCGGAGCTATTCCTTAAGTT 119
Query 120 CCGCAAAGAGCTTCAAGGCCTTCGTGTCGGCGTCAATCTTGAGTTATATAATGAACCCAC 179
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 120 CCGCAAAGAGCTTCAAGGCCTTCGCGTCGGCGTCAATCTCGAGTTATATAACGAACCCAC 179
Query 180 GAATGATTACCACGCAAAGCTTGTTTTGAAGCCTCTATGTCCAGAAAGGAAGTGGAAGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAATGATTACCACGCAAAGCTTGTTTTGAAGCCTCTATGTCCAGAAAGGAAGTGGAAGTT 239
Query 240 TATATATGAGCCGCTACACCAAGAAGTTCGTGTCCAATCAAAGAAGATTCCTGTCACCAG 299
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 240 TATATATGAGCCGCTACACCAAGAAGTTCGTGTTTTATCGAAGAAGATTCCTGTCACCAG 299
Query 300 ATTTCTAAACCTCCAGGTTGGTATAGGACATAATTTTCAAATGAATGCAATTGGTTGGAA 359
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 300 ATTTCTAAACCTCCAGGTTGGTGTTGGACATAACTTTCAAATGAATGCAATTGGTTGGAA 359
Query 360 ATGGAAGCTTACTTCATGTTTGGGTGGAGATGGTGTATCTCGGATTCGAAACAAAACTAC 419
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 360 ATGGAAGCTTACTTCATGTTTGGGTGGAGATGGTGTGTCTCGGATTCGAAATAAAACTAC 419
Query 420 TCTTGGTCTTAGTCCTGGTATCGATTTCCGGTTTGGATGGAGAGCTGATTTTGTACTTCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TCTTGGTCTTAGTCCTGGTATCGATTTCCGGTTTGGATGGAGAGCTGATTTTGTACTCCC 479
Query 480 AGAGGTTACTGGGGCCCTTGGGACAGAGGAACCGTTATTCAACATGAGCTCCGGGCGTTT 539
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 480 AGAGGTTACTGGGGCCCTTGGTACTGAGGAACCGTTATTCAACATGAGCTCCGGGCGTTT 539
Query 540 AGAGGCATCACTGGACAGAGTAGAGGCCATTATAACCCATTCAGATTATCTATAGCCAAT 599
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 AGAGGCATCACTAGACAGAGTAGAGGCCATTGTAACCCATTCAGATTATCTATAGCCAAT 599
Query 600 CCGTAAGTGTAGATCTTTCGTGCGCAAACGAGGACGAGATCTTGACAATATCAGAAGGCA 659
||||| |||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 600 CCGTAC--------CTTTCGTGTGCAAACGAGGACGAGATCTTG-CATTATCAGAAGGCA 650
Query 660 AACATGTGAAAGCACAAGCACTTTGGTGTTCACAACCAAAACCTAAGAATATCCATAAGA 719
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 651 AACATGTGAAAGCACAAGCACTTTGGTGTTCACAACCAAAACATAAGAATGTCCATAAGA 710
Query 720 TTTTGCTTTAGAGA--TATGCTGAAAGCACAAGCACTTGTGGGTAGTTTCGT--GTCTGT 775
|||||||| ||||| ||||||||||||||||||||| |||||||||||| | || | |
Sbjct 711 TTTTGCTTCAGAGAGATATGCTGAAAGCACAAGCACTAGTGGGTAGTTTCATCAGT-TAT 769
Query 776 TATACGATTTGGTAATCACTAGTTTGATGGACGTTCATGCAATGGATCTAAAGAAATGTA 835
||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 770 TATACTATCTGGTAATCACTAGTTTGATGGACGTTCATACAATGCATCTAAAGAAATGTA 829
Query 836 TAATCGTTGGATCTTTGATAAAAGTTAGGTAAAATAA 872
||||||||||||| |||||| ||||||||| | ||||
Sbjct 830 TAATCGTTGGATCGTTGATACAAGTTAGGTTAGATAA 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5