BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480213
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06025.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1626 0.0
> AT2G06025.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:2348136-2352157 FORWARD LENGTH=1431
Length=1431
Score = 1626 bits (880), Expect = 0.0
Identities = 1038/1111 (93%), Gaps = 24/1111 (2%)
Strand=Plus/Plus
Query 1 GTCAAAAGTTGCTTTCTGTTACGGCGGCGATGTCGACGATTTCGATCCATCGGACTGA-A 59
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 277 GTCAAACTTTGCTTTCTGGTACGGCGGCGATGTCGACGATTTCGATCCATCGGACTGAGA 336
Query 60 CTGCTACGAATCACGCACAATCGGTCTCGAAT-TTCCCGGCAGAGATTTCGGAGAACTAT 118
|| ||||||||||| ||| |||||| ||||| || ||||||||||| ||||||||||||
Sbjct 337 CT-CTACGAATCACTCACGCTCGGTCACGAATCTT-CCGGCAGAGATATCGGAGAACTAT 394
Query 119 CCCTCTTTGGAAATTAACGATCAATTCGAGATCTTCTGATACATCTAAGAAGGAAGAACT 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 395 CCCTCTTTGGAAATTAACAATCAATTCGAGATCTTCTGATACATCTAAGAAGGAAGAACT 454
Query 179 CTCTGTGA-AGATATCAATTCCTCCTCAAGTTGATCAATTAAAACCTGAAGGTTTGAGAT 237
|||||| | | |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 455 CTCTGT-ACAAATATCAATTCCTCCTCAAGTTGATCAATCAAGACCTGAAGGTTTGAGAT 513
Query 238 TCGATCGTTTGCAGCCTCCTGAGCCAGACTTTGGTCATGAAGATAGATTGGAATTTGGTA 297
|||||||||| || ||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 514 TCGATCGTTTACAACCTCCGGAGCCAGAGTTTGGTCATGAAGATAGATTTGAGTTTGGTA 573
Query 298 AATTCGTAGCAAGAGAAGCTATGGTTGACGAAGAATATTGGACTGCAGCTTGGCTTCGTG 357
|||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 574 AATTCGTAGCTAGAGAAGCTATGCTTGATGAAGAATATTGGACTGCAGCTTGGCTTCGTG 633
Query 358 CAGAGAGTCATTGGGAAGATCGTTCCAATGAAAGATATGTTGATAACTACAAAAGGAAAT 417
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 634 CAGAGAGTCACTGGGAAGATCGCTCCAATGAAAGATATGTTGATAACTACAAAAGGAAAT 693
Query 418 TTGCAGAGCAGGAGTTTAATGCCATAAAAAGAAGATGTAAAGGGATGCAAGGACAGAAAT 477
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 694 TTGCAGAGCAGGAGTTTAATGCTATTAAAAGAAGATGTAAAGGGATGCAAGGACAGAAAT 753
Query 478 GCTCCTGTATCGTTGCGGTAAAGAAGGAAGAGAAGCACATTAAACGTTCAGTAATCAAAA 537
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 754 GCTCATGTATCGTTGCGGTAAAGAAGGAAGAGAAGCATATTAAACGTTCAGTAATCAAAA 813
Query 538 GTGTGGTTGGGACGCTTGATTTGAGTATTCGGTATTTCTTGCAGGGAGAGACCTTTCCTG 597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 814 GTGTGGTTGGGACGCTTGATTTGAGTATTCGGTATTTTTTGCAGGGAGAGACCTTTCCTG 873
Query 598 GGGAAAAGGTTAAGTCTCAATTGTTCTGCAGCATAAACCGGGAAGGATCAAATAGGTATG 657
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 874 GGGAAAAGGTGAAGTCTCAATTGTTCTGCAGCATAAACCAGGAAGGATCAAATAGGTATG 933
Query 658 GTTATATTGCTAATCTATGTGTTGCGAAATCAGCTCGTCGCCAGGGCATTGCTTGCAATA 717
|||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 934 GTTATATTGCTAATCTATGTGTTGCGAAATCAGCACGCCGCCAGGGTATTGCTTGCAACA 993
Query 718 TGTTACGTTTCGCTGTCGAATCAGCCAGATTGAGTGGAGTTGAACAAGTATATGTTCATG 777
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 994 TGTTACGTTTCGCTGTCGAATCAGCCAGACTGAGTGGAGTTGAACAAGTATATGTTCATG 1053
Query 778 TACATAAAAACAATTCAGTTGCTCAAGAATTATATCAGAAGACCGGTTTCAAGATCGTTG 837
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 1054 TACATAAAAACAATTCAGTTGCTCAGGAATTATACCAGAAGACCGGTTTTAAGATTGTTG 1113
Query 838 AAACGGGTAAATTTGAATCATTAGATGATGATACATACTTGCTCCAGTACACAAGATAAC 897
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1114 AAACAGGTAAATTTGAATCATTAGATGATGATACATACTTGCTCCAGTACACAAGCTAAC 1173
Query 898 ACACAAGAAAACGATCTTTGTTCTCTCTGCCCTTTCTTGATTGTTTTTGTTTTGGAGAAT 957
||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 ACACACGAAAGCGATCTTGGTTCTCTCTGCCCTTTCTTGATTGTTTTTGTTTTGGAGAAT 1233
Query 958 GGGAGAGAAGAATCTCGTGGCTCACTTGTTAAT---TT-GTTTGTCATGTAAAGTATAGT 1013
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1234 GGGAGAGAAGAATCTCGTGGCTCACTTGTTAATGCATTTGTTTGTCATGTAAAGTATAGT 1293
Query 1014 C--AA--GTGTGT----------ATTAAGTCCAACTTTCATGTACAATTGTGTGTGCGTT 1059
|| |||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct 1294 GTGAAATGTGTGTGTGTGGGGGGATTAAGTCCAAGTTTCATGTACAATTGTGTGTGCTTT 1353
Query 1060 GTGGAGAAGTGTATATTTGGCTTTGGATTCA 1090
||| |||||| ||||||||||||||||||||
Sbjct 1354 GTGAAGAAGTATATATTTGGCTTTGGATTCA 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5