BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480218
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor ... 1253 0.0
> AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor
6 | chr2:2426271-2427323 FORWARD LENGTH=872
Length=872
Score = 1253 bits (678), Expect = 0.0
Identities = 802/857 (94%), Gaps = 27/857 (3%)
Strand=Plus/Plus
Query 1 AATCCCAAtctttaatctttaatctttcttcttcttctctctctctcttcctctcttcAT 60
||||||||||||||||| | |||||||||||| ||||||| |||||| ||||||||||
Sbjct 15 AATCCCAATCTTTAATC--T-CTCTTTCTTCTTCATCTCTCTTTCTCTTTCTCTCTTCAT 71
Query 61 GGCTACTAGGATTCCATTCACAGAATCACAATGGGAAGAGCTTGAAAACCAAGCTCTTGT 120
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 72 GGCTACAAGGATTCCATTCACAGAATCACAATGGGAAGAACTTGAAAACCAAGCTCTTGT 131
Query 121 GTTCAAGTACTTAGCCT-CAAATGTTCCAGTTCCACCTCAtcttctcttcctcatcaaaa 179
|||||||||||||| || ||||| | || |||||||||||||||||||||||||||||||
Sbjct 132 GTTCAAGTACTTAG-CTGCAAATATGCCTGTTCCACCTCATCTTCTCTTCCTCATCAAAA 190
Query 180 gaccctttctcttctcttcttcttcttc--c-tcttcctcttcaagcttcttctctccca 236
|||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 191 GACCCTTTCTCTTCTCTTCTTCTTCTTCTTCATCTTCTTCTTCAAGCTTCTTCTCTCCCA 250
Query 237 ctctttctccACACTTTGGGTGGAATGTGTATGAGATGGGAATGGGAAGAAAGATAGATG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CTCTTTCTCCACACTTTGGGTGGAATGTGTATGAGATGGGAATGGGAAGAAAGATAGATG 310
Query 297 CAGAGCCAGGAAGATGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCCAAAGAAGCTT 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 311 CAGAGCCAGGAAGATGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCTAAAGAAGCTT 370
Query 357 ATCCTGACTCTAAGTACTGTGAGAGGCATATGCATAGAGGCAAGAACCGTTCTTCCTCAA 416
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 ACCCTGACTCTAAGTACTGTGAGAGACATATGCATAGAGGCAAGAACCGTTCTTCCTCAA 430
Query 417 GAAAGCCTCCTCCTACTCAATTCACACCAAATCTCTTTCTCGACTCTTCTCTATCAAGAA 476
||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||
Sbjct 431 GAAAGCCTCCTCCTACTCAATTCACTCCAAATCTCTTTCTCGACTCTTCT-TC-CA-GAA 487
Query 477 GAAGAAGAAGTGGATACATGGATGATTTCTTCTCCATAGAACCTTCCGGGTCAATCAAAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GAAGAAGAAGTGGATACATGGATGATTTCTTCTCCATAGAACCTTCCGGGTCAATCAAAA 547
Query 537 GCTGCTCTGGCTCAGCAATGGAAGATAATGATGATGGCTCATGTAGGGGCATCAACAAAT 596
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 GCTGCTCTGGCTCAGCAATGGAAGATAATGATGATGGCTCATGTAGAGGCATCAACAA-- 605
Query 597 TTTCTAACGAGGAGAAGCAGCCGGATCGACATTGCTTCATCCTTGGAACTGACTTGGGGA 656
| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 606 ---C----GAGGAGAAGCAGCCGGATCGACATTGCTTCATCCTTGGTACTGACTTGAGGA 658
Query 657 CTTGTGAGAGGCCATTGATGCTT-GAGGAGAAGCTGAAACAAAGAGATGATGAT---GAA 712
| ||||||||||||||||| || |||||||||||||||||||||||| ||||| |||
Sbjct 659 CACGTGAGAGGCCATTGATG-TTAGAGGAGAAGCTGAAACAAAGAGATCATGATAATGAA 717
Query 713 CAAGAGCAAGGTAGCAAGAGGTTTTATAGGTTTCTTGATGAATGGCCTTCTTCTAAGTCT 772
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 GAAGAGCAAGGAAGCAAGAGGTTTTATAGGTTTCTTGATGAATGGCCTTCTTCTAAATCT 777
Query 773 TCTGTTTCTACTTCACTCTTTATTTGATCATCTTTTGTTCTTA-A-CCTTCTGTTTCTTG 830
|||||||||||||||||||| |||||||||||||||||||||| | |||| | |||||||
Sbjct 778 TCTGTTTCTACTTCACTCTTCATTTGATCATCTTTTGTTCTTATAACCTTGTATTTCTTG 837
Query 831 TTAAGTTGGTAATGCAA 847
||||| |||||||||||
Sbjct 838 TTAAGATGGTAATGCAA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5