BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480223

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G06520.1 | Symbols: PSBX | photosystem II subunit X | chr2:2...   824    0.0  


> AT2G06520.1 | Symbols: PSBX | photosystem II subunit X | chr2:2587729-2588358 
REVERSE LENGTH=630
Length=630

 Score =  824 bits (446),  Expect = 0.0
 Identities = 501/528 (95%), Gaps = 2/528 (0%)
 Strand=Plus/Plus

Query  1    AAGATCAATCTAGAGAGACC-AAAAGAGATCGGAAGAGATGGCTTCTACCTCCGCGATGT  59
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  103  AAGATCAATCTAGAGAGACCAAAAAGAGATCGGAAGAGATGGCTTCTACCTCCGCGATGT  162

Query  60   CATTGGTCACGCCACTTAACCAGACCCGTTCGTCTCCTTTCCTCAAGCCATTACCTCTGA  119
            |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  163  CATTGGTCACACCACTTAACCAGACCCGTTCGTCTCCTTTCCTTAAGCCATTACCTCTGA  222

Query  120  AACCATCCAAGGCTTTGGTTGCAACTGGAGGCAGAGCACAGAGGCTTCAAGTTAAGGCGC  179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  223  AACCATCCAAGGCTTTGGTTGCAACTGGAGGCAGAGCACAGAGGCTTCAAGTTAAGGCCC  282

Query  180  TCAAGATGGACAAGGCTTTAACCGGAATCTCTGCAGCTGCTCTTACCGCTTCGATGGTGA  239
            ||||||||||||||||||| ||||| ||||| || ||||||||||| |||||||||||||
Sbjct  283  TCAAGATGGACAAGGCTTTGACCGGTATCTCCGCGGCTGCTCTTACTGCTTCGATGGTGA  342

Query  240  TCCCGGAGATAGCTGAGGCTGCTGGTTCTGGAATCTCTCCTTCCCTCAAGAATTTCTTGC  299
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  343  TTCCGGAGATAGCTGAAGCTGCTGGTTCTGGAATCTCTCCTTCCCTCAAGAATTTCTTGC  402

Query  300  TGAGCATTGCTTCTGGTGGCCTTGTTCTCACCGTCATCATTGGTGCCGTCGTTGGCGTCG  359
            | |||||||||||||||||||| || ||||| ||||||||||||| |||||| |||||| 
Sbjct  403  TCAGCATTGCTTCTGGTGGCCTCGTCCTCACTGTCATCATTGGTGTCGTCGTCGGCGTCT  462

Query  360  CCAACTTTGACCCTGTCAAGAGAACCTAAGAACTACATATCTTTCTTACATCATTATTGT  419
            ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  463  CCAACTTTGACCCTGTCAAGAGAACCTAAGACCTATATATCTTTCTTACATCATTATTGT  522

Query  420  AATCTGTTCTCCTTCTGTGTATTCGTTT-AATGTTGCAGCAATGAACTTTTGGATAAAAG  478
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  523  AATCTGTTCTCCTTCTGTGTATTCGTTTCAATGTTGCAGCAATGAACTTTTGGATAAAAG  582

Query  479  TAAAACTTGTTGTTTCCTGAATTCGAAAAACGAATGAGATTTGACATC  526
            | ||| |||||||||||||||||||||| |||| ||||| |||| |||
Sbjct  583  TCAAATTTGTTGTTTCCTGAATTCGAAAGACGATTGAGACTTGAAATC  630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25167307647


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5