BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480224
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:2588... 1471 0.0
> AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:2588545-2590453
REVERSE LENGTH=1041
Length=1041
Score = 1471 bits (796), Expect = 0.0
Identities = 898/946 (95%), Gaps = 12/946 (1%)
Strand=Plus/Plus
Query 49 TTTTTCCAGTCCGATCAAAGGTTTTGCTAATTCGTCGGCTTAATTTCGTTCAAGCTTCTG 108
|||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 69 TTTTTCAACTCCGATCAAAGGTTTTGCTAATTCGTCGCCTTAATTTCGTTCAAGCTTCTA 128
Query 109 C-AAATTCCCAGATTTGGT-A-----TT--G-A-AGAATCATGATGAATTCAATCTTCGG 157
| ||| ||||||||||| | | || | | |||||||||||||||||||||||||
Sbjct 129 CAAAAGTCCCAGATTTGTTCACCTTTTTCGGTATTGAATCATGATGAATTCAATCTTCGG 188
Query 158 AAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAAAACAAGCGGATGCTCGATAAGTCTAT 217
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 189 AAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAGAACAAGCGGATGCTGGATAAGTCTAT 248
Query 218 CAGGGAGATAGAGAGGGAGAGACAAGGCCTTCAAACACAAGAAAAGAAACTCATTAACGA 277
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 249 CAGAGAGATAGAGAGGGAGAGACAAGGCCTACAAACACAAGAAAAGAAACTCATTAACGA 308
Query 278 GATTAAAAAGACCGCAAAGCAGGGCCAGATGGGAGCCGTTAAAGTGATGGCAAAGGATCT 337
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 309 GATTAAAAAGACCGCAAAGCAAGGCCAAATGGGAGCTGTTAAAGTGATGGCAAAGGATCT 368
Query 338 TATCAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCCCAACTTCAAGGTGT 397
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 369 TATAAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCTCAACTTCAAGGTGT 428
Query 398 ATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCAATGGGTGAGGCGATGAAAGGTGT 457
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 429 ATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCGATGGGTGAGGCGATGAAAGGTGT 488
Query 458 GACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCAT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCAT 548
Query 518 GCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTGATGGGAGATGC 577
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 549 GCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTTATGGGAGATGC 608
Query 578 TATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCA 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCA 668
Query 638 AGTCCTTGACGAGATTGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGC 697
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AGTCCTTGACGAGATCGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGC 728
Query 698 GGTGGCAGTACCAGCCGCAAAGAACAAGGTGGTGCAAGCTGAAGCGACCGGAGCTGAGGA 757
||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 729 GGTCGCAGTACCCGCAGCAAAGAACAAGGTGGTACAAGCTGAGGCGACCGGAGCTGAGGA 788
Query 758 TAGCGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGACAACCTTCGAAAAATGTGAAG 817
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 789 CAGTGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGATAACCTTAGAAAAATGTGAAG 848
Query 818 CCTTTCCGGTTTCTGTATCATATTATTACTGAGGCTGATCACTTTTCAACTTCAAAGGCA 877
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 849 CCTTTCCTGTTTCTGTATCATAATATTACTGAGGCTGATCACTTTTCAATTTCAAAGGCA 908
Query 878 AATGTTGCAAACGATATGTTAACGTTTTGGGGGTGGGTTTGTAATAATTTCATAATTTGA 937
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 909 AATGTTGCAAACGATGTGTTAACGTTTTGGGGGTGGGTTTGTAATAAATTCATAATTTGA 968
Query 938 GCCCTAAATTATAAACC-GATTATTGTTCAAACACCTTGTATATAA 982
|||||| |||||||| | ||||||||||||||||| ||||||||||
Sbjct 969 GCCCTATATTATAAAACTGATTATTGTTCAAACACTTTGTATATAA 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5