BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480225
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06850.1 | Symbols: EXGT-A1, EXT, XTH4 | xyloglucan endotran... 1474 0.0
> AT2G06850.1 | Symbols: EXGT-A1, EXT, XTH4 | xyloglucan endotransglucosylase/hydrolase
4 | chr2:2763526-2765720 FORWARD LENGTH=1214
Length=1214
Score = 1474 bits (798), Expect = 0.0
Identities = 911/966 (94%), Gaps = 6/966 (1%)
Strand=Plus/Plus
Query 34 TCACCATCATCATCA-TT-TCTCTATCTCTTTCTAAAACACAACCATGACTGTTTCTTCA 91
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 49 TCATCATCATCATCATTTCTCTCTATCTCTTTCTAAAACACAACCATGACTGTTTCTTCA 108
Query 92 TCTCCATGGGCTCTGATGGCTCTGTTTCTGATGGTTTCTTCAACAATGGTAATGGCAATT 151
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 109 TCTCCATGGGCTCTCATGGCTCTCTTTCTAATGGTTTCTTCAACAATGGTAATGGCTATT 168
Query 152 CCTCCACGCAAGGCCATTGATGTCCCCTTTGGGCGTAACTACGTCCCAACTTGGGCTTTT 211
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 169 CCTCCACGCAAGGCCATTGATGTACCATTTGGTCGTAACTACGTCCCAACTTGGGCTTTT 228
Query 212 GACCACCAGAAACAGTTCAATGGCGGTTCTGAACTTCAGCTTATCCTCGACAAAAACACT 271
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 229 GACCACCAGAAACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACT 288
Query 272 GGGACAGGGTTTCAATCAAAAGGCTCATATTTGTTTGGACATTTTAGTATGCACATAAAG 331
|| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 289 GGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCACATAAAG 348
Query 332 CTTCCGGCTGGTGACACAGCTGGAGTTGTCACAGCTTTCTATCTTTCATCGACCAACAAC 391
||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 349 CTTCCAGCTGGTGACACAGCCGGAGTTGTCACAGCTTTCTATCTATCATCTACCAACAAT 408
Query 392 GAGCATGACGAGATAGACTTTGAGTTTCTTGGGAACCGAACAGGACAACCAGCAATATTG 451
|||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 409 GAGCATGACGAGATAGACTTTGAGTTCCTTGGAAACAGAACAGGACAACCAGCTATATTA 468
Query 452 CAGACAAATGTGTTCACAGGAGGAAAAGGAAACAGAGAACAACGCATCTATCTCTGGTTT 511
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 469 CAGACAAATGTATTCACAGGAGGAAAGGGAAACAGAGAACAACGAATCTATCTCTGGTTT 528
Query 512 GATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTTTTC 571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 529 GATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTATTC 588
Query 572 TTTGTTGACAACATACCAATCCGAACGTTCAAGAACGCTAAGGATTTAGGAGTACGTTTC 631
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 589 TTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCTAGGAGTACGTTTC 648
Query 632 CCATTCAACCAACCGATGAAGCTTTACTCGAGCCTTTGGAACGCTGATGATTGGGCCACT 691
|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 649 CCATTCAACCAACCAATGAAGCTTTACTCAAGCCTTTGGAACGCGGATGATTGGGCCACG 708
Query 692 AGAGGCGGCTTAGAGAAAACCAATTGGGCCAATGCACCTTTCATTGCATCCTACAAAGGA 751
|||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||
Sbjct 709 AGAGGCGGTTTAGAGAAGACCAATTGGGCCAATGCACCTTTCGTTGCATCTTACAAAGGA 768
Query 752 TTCTACATTGATGGTTGCCAAGCTTCTGTGGAAGCTAAGTACTGTGCCACCCAAGGCCGC 811
||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 769 TTCCACATAGATGGTTGCCAAGCTTCTGTGGAAGCCAAGTACTGTGCCACACAAGGCCGC 828
Query 812 ATGTGGTGGGACCAGAATGAATTCCGTGACCTTGACGCTGAACAATGGCGCCGTCTCAAA 871
||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 829 ATGTGGTGGGATCAGAAAGAGTTCCGTGACCTTGACGCTGAACAATGGCGTCGTCTCAAA 888
Query 872 TGGGTTCGTATGAAGTGGACCATCTACAACTACTGTACCGACCGGACTAGGTTCCCGGTT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGGGTTCGTATGAAGTGGACCATCTACAACTACTGTACCGACCGGACTAGGTTCCCGGTT 948
Query 932 ATGCCAGCGGAATGTAAAAGGGACAGAGACGCATAAGT-ACT-CT-T-GAGGGTTTCAAT 987
|||||||| ||||||||||||||||||||||||||||| ||| || | |||||||| |||
Sbjct 949 ATGCCAGCTGAATGTAAAAGGGACAGAGACGCATAAGTTACTACTCTTGAGGGTTTTAAT 1008
Query 988 GGATTT 993
| ||||
Sbjct 1009 GAATTT 1014
Score = 132 bits (71), Expect = 8e-30
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 993 TTGTTCAAGAGATTGATATATGTATTGTTTGTTGGCCCGTGATGTTTATGCTATGTTTGG 1052
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1042 TTGTTCAAGAGATTGATATATGTATTGTTTGTTGGCCCATGATGTTTATGCTATATTTGG 1101
Query 1053 GCCTAAATTTACATGTTATA 1072
||||||| ||||||||||||
Sbjct 1102 GCCTAAAATTACATGTTATA 1121
Score = 86.1 bits (46), Expect = 6e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 TATATAAAGCCACCCACACCCCTTTAGCTTCTCTCACCATCATCATCAT 49
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TATATAAAGCCAACCACACCCCTTTAGCTTCTCTCACCATCATCATCAT 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5