BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480229
Length=2170
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07040.1 | Symbols: ATPRK2A, PRK2A | Leucine-rich repeat pro... 3073 0.0
> AT2G07040.1 | Symbols: ATPRK2A, PRK2A | Leucine-rich repeat protein
kinase family protein | chr2:2916538-2918942 FORWARD
LENGTH=2209
Length=2209
Score = 3073 bits (1664), Expect = 0.0
Identities = 2024/2195 (92%), Gaps = 36/2195 (2%)
Strand=Plus/Plus
Query 1 TCATCTCCAGAGACTCTCCTTGCATCTTCCTTTAGAGGGCGCGCCTCCCGTGCGCCTTCT 60
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 15 TCATCTCCAGAGACTCTCCTTCCATCTACCCTTAGAGGGCGCGCCTCCCGTGCGCCTTC- 73
Query 61 TTAACTGGTTATGGAATCCACATGTTTCCTCTTCTTTTCCATTGTATCTATCTTCTTCGT 120
|||||||||||||||||||| |||| || | ||| |||||||||||||| |||||||| |
Sbjct 74 TTAACTGGTTATGGAATCCAAATGTCTCATGTTCGTTTCCATTGTATCTGTCTTCTTCAT 133
Query 121 GGCTGCTCATGGCTTATCAGAGACCGAATCTCTCTTGAAATTCAAGAATTCTCTTGTTAT 180
|| || | ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 134 GGTTGTTAATGGCGTATCAGAGACCGAAACTCTCTTGAAATTCAAGAATTCTCTTGTTAT 193
Query 181 TGGGAGAGCAAATGCTTTGGAGAGCTGGAATAGAAGTAATCCTCCATGCAAATGGACTGG 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 194 TGGGAGAGCAAATGCTTTGGAGAGCTGGAATAGAAGGAATCCTCCATGCAAATGGACTGG 253
Query 241 TGTCTTGTGTGATAGAGGCTTTGTTTGGGGATTACGACTAGAGACTTTTGAGATCTCCGG 300
|||||||||||||||||||||||||||||| ||||||||||||| | ||||| |||| ||
Sbjct 254 TGTCTTGTGTGATAGAGGCTTTGTTTGGGGGTTACGACTAGAGAATCTTGAGCTCTCTGG 313
Query 301 CTCTATAGACATCGAGGCGTTGATGGATTTGAAGTCTCTAAGGTCTCTTAGCTTCATAAA 360
|||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 314 CTCTATCGACATCGAGGCGTTGATGGGTTTGAATTCTCTAAGGTCTCTTAGTTTCATAAA 373
Query 361 CAACAAACTTAGAGGTCCATTTCCAGAGTTCAAAAAACTTGTTGCTTTGAAATCACTTTA 420
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 374 CAACAAATTTAAAGGTCCATTTCCAGAGTTCAAGAAACTTGTTGCTTTGAAATCACTTTA 433
Query 421 CTTGTCAAACAATCAATTCGACGTAAAGATACCTAAGGATGCATTTGATGGGATGGGGTG 480
|||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 434 CTTGTCAAACAATCAATTCGACCTAGAGATACCTAAGGATGCATTTGATGGCATGGGGTG 493
Query 481 GTTGAAAAAACTCCATCTGGAG-AACAATAAGTTTAGTGGTGAAATTCCAACGTCTTTGG 539
|||||||||||| ||||||||| || ||||| |||| |||||||||||||||||| ||||
Sbjct 494 GTTGAAAAAACTTCATCTGGAGCAA-AATAATTTTATTGGTGAAATTCCAACGTCCTTGG 552
Query 540 TCAAAAGTCCTAAGCTTTTAGAGCTTAGACTTGACGGGAACCGGTTCACTGGACAAATAC 599
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 553 TCAAAAGTCCAAAGCTTATAGAGCTTAGACTTGACGGGAACCGGTTCACCGGACAAATAC 612
Query 600 CGGAATTCACACATCAACCACACATGTTAAACCTTTCAAACAATGCATTGGCAGGTCAAA 659
| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 613 CAGAATTCAGACATCATCCAAACATGTTAAACCTTTCAAACAATGCATTGGCAGGTCAAA 672
Query 660 TCCCAAATA-TTCTCAGTACAATGGATTCAAAATTGTTTGAAGGAAACAAAGGCTTATGT 718
||||||||| || |||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 673 TCCCAAATAGTT-TCAGTACAATGGATCCAAAATTGTTTGAAGGGAATAAAGGCTTATGT 731
Query 719 GGGAAACCTTTGGATACAAAGTGTACTTCTTCTTACAATCTTTCCCCAGAGCCTAAGTCA 778
|| ||||||||||||||||||||| ||||| ||||||| | |||| | || || |||||
Sbjct 732 GGAAAACCTTTGGATACAAAGTGTTCTTCTCCTTACAACCATTCCTCGGAACCCAAGTCG 791
Query 779 AGCCCCAAGAAAAAATCATTTAAGTTTTTGTACATTGTAGCTGTAGC-GATAGTAGCACT 837
||| ||||||||| ||||| |||||||||||||||||||||| ||| | ||| ||||||
Sbjct 792 AGCACCAAGAAAACATCATCAAAGTTTTTGTACATTGTAGCTGCAGCAG-TAGCAGCACT 850
Query 838 GGCTGCATTACTCGTAATTATTGGATTGATCATCTTCCTT-TACCGGAGACGAACTAAGA 896
||||||| |||| ||||||||||| || ||||||||||| | ||| ||||||| ||||
Sbjct 851 AGCTGCATCACTCATAATTATTGGAGTGGTCATCTTCCTTAT-CCGAAGACGAAAGAAGA 909
Query 897 AACAACCACTATTGTCAGCAGAACCTGGACCATCAAGTCTACAAATGAGAGCTGGAATCC 956
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 910 AACAACCATTATTGTCAGCAGAACCAGGACCATCAAGTCTACAAATGAGAGCTGGAATCC 969
Query 957 AAGAAAGTGAAAGGGGACAAAGTAGCTACCATTCACAAAACCGCGCTGCAAAAAAGATGA 1016
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 970 AAGAAAGTGAAAGGGGACAAGGTAGCTACCATTCACAAAACCGTGCTGCTAAAAAGATGA 1029
Query 1017 TTCATACCACAAAATTGTCATTTTTGAGGGATGACAAGGGAAAATTTGAGTTGCAAGATT 1076
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1030 TTCATACCACAAAATTGTCATTTTTGAGAGATGACAAGGGGAAATTTGAGTTGCAAGATT 1089
Query 1077 TATTGAAAGCATCGGCAGAGATTCTAGGAAGTGGATGTTTCGGAGCATCGTATAAGACAC 1136
||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1090 TATTGAAAGCATCAGCAGAGATTCTAGGAAGTGGATGTTTTGGAGCTTCGTATAAGACAT 1149
Query 1137 TGCTTTCGAACGGATCAGTGATGGTAGTGAAGAGGTTTAAACATATGAATAAG-GCAGGA 1195
|||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1150 TGCTTTCGAACGGATCGGTGATGGTAGTGAAGAGGTTTAAACATATGAATA-GTGCAGGA 1208
Query 1196 ATTGAAGAGTTCCAAGAACACATGAAGAGGTTGGGGAGGTTAAACCATGAGAATTTGCTC 1255
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1209 ATTGATGAGTTCCAAGAACACATGAAAAGGTTGGGGAGGTTAAACCATGAGAATTTGCTC 1268
Query 1256 CCCATTGTGGCTTATTACTATAAAAAAGAGGAAAAGCTTTTTGTTTCCGATTTTGTTGCG 1315
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CCAATTGTTGCTTATTACTACAAAAAAGAGGAAAAGCTTTTTGTTTCCGATTTTGTTGCA 1328
Query 1316 AATGGAAGCTTGGCTGCTCATCTACATGGTCATAAATCTTTAGGGCAACCAAGCTTGGAT 1375
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1329 AATGGAAGCTTGGCTGCTCATCTCCATGGTCATAAATCCCTAGGGCAACCAAGCTTGGAT 1388
Query 1376 TGGCCAACAAGATTGAATATTGTGAAAGGTGTAGGAAGGGGACTTTTATACCTCAACAAA 1435
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1389 TGGCCAACAAGATTCAATATTGTGAAAGGTGTAGGAAGGGGACTTTTATACCTCCACAAA 1448
Query 1436 AACCTACCTAGCCTAATGGCTCCTCATGGTCATCTAAAATCATCTAATGTTCTTCTCAGT 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1449 AACCTACCTAGCCTAATGGCTCCTCATGGTCATCTAAAATCATCTAATGTTCTTCTAAGT 1508
Query 1496 GAGAAATTTGAGCCTCTTCTTATGGACTATGGCTTGATCCCAATGATCAACGAAGAGAGC 1555
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 1509 GAGAAATTTGAGCCTCTTCTTATGGACTATGGTTTAATCCCAATGATCAACGAAGAAAGC 1568
Query 1556 GCGCAAGAGCTCATGGTGGCTTACAAATCCCCAGAGTACTTAAAACAAAACCGTGTGACC 1615
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1569 GCGCAAGAGCTCATGGTGGCTTACAAATCCCCAGAGTACGTAAAACAAAGCCGTGTGACC 1628
Query 1616 AAGAAAACCGATGTTTGGGGGCTCGGGGTACTAATCTTGGAGATTCTTACAGGAAAGTTA 1675
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 1629 AAGAAAACCGATGTTTGGGGGCTAGGTGTACTCATCTTGGAGATTCTTACGGGAAAGTTA 1688
Query 1676 CCTGAAAGTTTCCCGCAAATCGATAAAGAAAGCGAGGAGGACCTAGCCAGCTGGGTGAGG 1735
| |||||||||| | ||| | |||||||||||||||||||||||||| |||||||| |||
Sbjct 1689 CTTGAAAGTTTCTCACAAGTGGATAAAGAAAGCGAGGAGGACCTAGCGAGCTGGGTAAGG 1748
Query 1736 TCGATGTTT-AAAGGAGAGTGGACACAGGAATTGTTTGATCAAGAAATGGGGACAACAAG 1794
|| | |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1749 TCTA-GTTTTAAAGGAGAGTGGACACAAGAATTGTTTGATCAAGAAATGGGGAAAACAAG 1807
Query 1795 CAATTGTGAAGCACATATACTCAAACTCTTGAAAATTGGACTGAGTTGTTGTGAAGTAGA 1854
|||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||
Sbjct 1808 CAATTGTGAAGCACATATACTCAATCTCATGAGAATTGGATTGAGTTGTTGTGAAGTAGA 1867
Query 1855 TGTGGAGAAAAGGTTagatataagagaggctgttgagaagatagaagatatgatgaagga 1914
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1868 TGTGGAGAAAAGGTTAGATATAAGAGAGGCTGTTGAGAAGATGGAAGATTTGATGAAGGA 1927
Query 1915 gagagaacaaggagatgatGACTTCTACTCAACATATGCGAGTGAAGCTGATGGGAGATC 1974
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1928 GAGAGAACAAGGAGATGATGACTTTTACTCAACATATGCGAGTGAAGCTGATGGGAGATC 1987
Query 1975 ATCGAGGGGAGTGTCAAGTGAGGGAATTAACTTGTCATGAAAA-T-----GA---G--AT 2023
||||||||| | |||||||||||||||||||||||||||||| | || | ||
Sbjct 1988 GTCGAGGGGACTATCAAGTGAGGGAATTAACTTGTCATGAAAAGTAAATCGACAAGCTAT 2047
Query 2024 CGAC-AA--TTTTCATGCAAGAGTTGTGTCTTAAAACCACAACTTGGTTGGA-CATAATT 2079
| | || ||||||||||| |||||| ||||||||| ||||||| ||||| | |||||
Sbjct 2048 CAAGTAAACTTTTCATGCAAAAGTTGT--CTTAAAACCGCAACTTGCTTGGAGC-TAATT 2104
Query 2080 GATGTCGACACCTCAATATACGGGATCCC--TT-A-ACGTAGAAAAAAGTTGGTTTTGAG 2135
||||||||||| ||||||||||| ||||| || | | ||||||||| |||||||||| |
Sbjct 2105 GATGTCGACACTTCAATATACGGAATCCCCCTTTATAAGTAGAAAAA-GTTGGTTTTGCG 2163
Query 2136 TTGACGTGTGATGTTATTGTGGGAATTTTATCTGC 2170
|| ||||||||| ||||| ||||||||| ||||||
Sbjct 2164 TTAACGTGTGATATTATTTTGGGAATTTCATCTGC 2198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107629968480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5