BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480231
Length=2616
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07050.1 | Symbols: CAS1 | cycloartenol synthase 1 | chr2:29... 4078 0.0
AT3G29255.1 | Symbols: | catalytics;intramolecular transferase... 62.1 3e-08
> AT2G07050.1 | Symbols: CAS1 | cycloartenol synthase 1 | chr2:2924447-2930672
FORWARD LENGTH=2839
Length=2839
Score = 4078 bits (2208), Expect = 0.0
Identities = 2441/2550 (96%), Gaps = 29/2550 (1%)
Strand=Plus/Plus
Query 1 GAGCGACAATGTGGAAACTGAAGATCGCGGAAGGAGGTAGTCCATGGCTTAGAACCACCA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GAGCGATAATGTGGAAACTGAAGATCGCGGAAGGAGGTAGTCCATGGCTTAGAACCACCA 234
Query 61 ATAATCACGTCGGAAGACAGTTTTGGGAGTTCGATCCGAATCTCGGTACTCCTGAGGATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATAATCACGTCGGAAGACAGTTTTGGGAGTTCGATCCGAATCTCGGTACTCCTGAGGATC 294
Query 121 TCGCCGCCGTCGAGGAAGCTAGGAAGTCTTTTTCAGATAACCGATTCGTGCAGAAACATA 180
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 295 TCGCCGCCGTCGAAGAAGCTAGGAAGTCTTTTTCGGATAATCGATTCGTGCAGAAACATA 354
Query 181 GCTCCGATCTGCTTATGCGCCTTCAGTTTTCAAGAGAAAATTTGATTAGCCCAGTTTTAC 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GCGCCGATCTGCTTATGCGCCTTCAGTTTTCAAGAGAAAATTTGATTAGCCCAGTTTTAC 414
Query 241 CTCAAGTCAAAATCGAAGATACTGATGATGTTACAGAGGATATGGTGGAAAACACGTTAA 300
||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 415 CTCAAGTCAAAATCGAAGACACTGATGATGTTACAGAGGAGATGGTGGAAACCACGTTAA 474
Query 301 AGAGGGGTGTAGATTTCTATTCAACAATACAGGCGCACGACGGGCACTGGCCAGGTGATT 360
|||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 475 AGAGGGGTCTAGATTTCTATTCAACTATACAGGCACACGACGGGCACTGGCCAGGTGATT 534
Query 361 ATGGTGGTCCTATGTTTCTTCTCCCAGGACTGATAATTACACTCTCCATAACTGGAGCAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATGGTGGTCCTATGTTTCTTCTCCCAGGACTGATAATTACACTCTCCATAACTGGAGCAC 594
Query 421 TGAATACAGTATTGTCGGAACAACATAAACAAGAAATGCGCCGTTATCTCTTTAATCACC 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 595 TGAATACAGTATTGTCGGAACAACATAAACAAGAAATGCGCCGTTATCTCTATAATCACC 654
Query 481 AGAATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCCTAGCACCATGTTTGGGTCTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGAATGAGGACGGAGGTTGGGGTTTACATATTGAGGGCCCTAGCACCATGTTTGGGTCTG 714
Query 541 TGTTGAACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAACGATGGAGATGGAGCTA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 715 TGTTGAACTATGTTACTCTAAGGTTGCTTGGAGAAGGACCTAACGATGGAGATGGAGATA 774
Query 601 TGGAGAAAGGGCGAGACTGGATACTAAATCATGGTGGTGCTACCAATATCACATCTTGGG 660
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 775 TGGAGAAAGGACGAGACTGGATACTAAATCATGGTGGTGCTACCAATATTACATCTTGGG 834
Query 661 GGAAAATGTGGCTATCGGTACTTGGAGCTTTTGAATGGTCTGGAAATAACCCACTGCCAC 720
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 835 GGAAAATGTGGCTATCGGTACTTGGAGCTTTTGAATGGTCCGGAAATAACCCACTGCCAC 894
Query 721 CTGAGATATGGCTTCTTCCATATTTCCTGCCAATTCATCCAGGAAGGATGTGGTGCCATT 780
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 CTGAGATATGGCTTCTCCCATATTTCCTGCCAATACATCCAGGAAGGATGTGGTGCCATT 954
Query 781 GTCGGATGGTGTACTTGCCAATGTCGTATTTGTATGGAAAAAGGTTTGTGGGTCCCATAA 840
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GTCGAATGGTGTACTTGCCGATGTCGTATTTGTATGGAAAAAGGTTTGTGGGTCCCATAA 1014
Query 841 CGTCCACTATTTTATCACTGAGAAAGGAGCTTTTCACTGTACCATATCATGAAGTCAACT 900
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 CGTCCACTGTTTTATCACTGAGAAAGGAGCTTTTCACAGTACCATATCATGAAGTCAACT 1074
Query 901 GGAATGAAGCACGCAACCTTTGCGCAAAGGAGGATTTATACTACCCACACCCACTTGTGC 960
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1075 GGAATGAAGCACGCAACCTTTGCGCAAAGGAGGATTTATACTACCCACATCCACTTGTGC 1134
Query 961 AAGATATTCTTTGGGCATCACTTCATAAGATTGTTGAGCCTGTTCTGATGCGATGGCCTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AAGATATTCTTTGGGCATCACTTCATAAGATTGTTGAGCCTGTTCTGATGCGATGGCCTG 1194
Query 1021 GTGCAAATTTGAGAGAAAAGGCTATAAGAACCGCAATAGAACATATTCATTATGAAGATG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTGCAAATTTGAGAGAAAAGGCTATAAGAACCGCAATAGAACATATTCATTATGAAGATG 1254
Query 1081 AGAATACTAGGTACATCTGCATAGGTCCCGTGAACAAGGTATTAAATATGCTTTGCTGTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AGAATACTAGGTACATCTGCATAGGTCCCGTGAACAAGGTATTAAATATGCTTTGCTGTT 1314
Query 1141 GGGTAGAGGACCCAAACTCAGAGGCTTTCAAGTTGCACCTACCAAGAATCCATGACTTTC 1200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GGGTAGAAGACCCAAACTCAGAGGCTTTCAAGTTGCACCTACCAAGAATCCATGACTTTC 1374
Query 1201 TCTGGCTAGCTGAAGATGGAATGAAGATGCAGGGTTATAACGGAAGTCAGCTATGGGATA 1260
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1375 TCTGGTTAGCTGAAGATGGAATGAAGATGCAGGGTTATAACGGAAGCCAGCTATGGGATA 1434
Query 1261 CAAGTTTTGCTATTCAAGCGATTTTGGCAACAAACCTTGTCGAAGAATATGGGCCCGTTT 1320
|| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1435 CAGGTTTTGCTATTCAAGCGATTTTGGCAACTAACCTCGTCGAAGAATATGGGCCCGTTT 1494
Query 1321 TGAAAAAAGCACATTCATTTGTCAAGAATTCTCAGGTGTTAGAAGACTGTCCTGGAGATC 1380
|| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1495 TGGAAAAAGCACATTCATTTGTCAAGAATTCCCAGGTGTTAGAAGACTGCCCTGGAGATC 1554
Query 1381 TGAATTACTGGTACCGCCACATTTCTAAAGGGGCTTGGCCTTTCTCAACTGCAGATCACG 1440
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGAATTACTGGTATCGCCACATTTCTAAAGGGGCTTGGCCTTTCTCAACTGCAGATCACG 1614
Query 1441 GTTGGCCCATCTCCGACTGCACCGCAGAAGGACTGAAAGCTGCTCTTTTGTTATCCGAAG 1500
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1615 GTTGGCCCATCTCTGACTGCACCGCAGAAGGACTGAAAGCTGCTCTTTTGCTATCCAAAG 1674
Query 1501 TTCCCAAAGAGATTGTTGGTGAACCAATAGATGCAAAACGGTTATATGATGCTGTTAATG 1560
||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1675 TTCCCAAGGCGATTGTTGGTGAACCAATAGATGCAAAACGGTTATATGAAGCTGTTAATG 1734
Query 1561 TTATCATTTCATTACAGAATGCAGATGGAGGCCTCGCAACATATGAGCTCACCAGGTCAT 1620
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TTATCATTTCTTTACAGAATGCAGATGGAGGCCTCGCAACATATGAGCTCACCAGGTCAT 1794
Query 1621 ACCCTTGGTTGGAGCTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATC 1680
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 ACCCTTGGTTAGAGCTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATC 1854
Query 1681 CTTACGTGGAATGTACATCAGCTGCTATCCAAGCTTTGATATCATTCCGAAAGCTGTATC 1740
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1855 CTTACGTGGAATGTACATCAGCTGCTATCCAAGCTTTGATATCATTTCGAAAGCTGTATC 1914
Query 1741 CTGGTCATCGGAAGAAGGAAGTAGATGAGTGCATTGAGAAGGCGGTTAAGTTCATTGAAT 1800
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 CTGGTCATCGAAAGAAGGAAGTAGATGAGTGCATTGAGAAGGCGGTTAAGTTCATTGAAT 1974
Query 1801 CTATTCAAGCAGCAGATGGCTCATGGTATGGATCATGGGCTGTTTGCTTCACATATGGTA 1860
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1975 CCATTCAAGCAGCAGATGGCTCATGGTATGGATCATGGGCTGTTTGCTTCACGTATGGTA 2034
Query 1861 CGTGGTTTGGAGTGAAAGGGCTGGTAGCTGTTGGAAAAACATTGAAAAACTCTTCACATG 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2035 CGTGGTTTGGAGTGAAAGGGCTGGTAGCTGTTGGAAAAACATTGAAAAACTCTCCACATG 2094
Query 1921 TTGCCAAAGCTTGCGAATTTCTATTGTCGAAACAACAACCTTCGGGCGGATGGGGAGAAA 1980
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2095 TTGCTAAAGCTTGTGAATTTCTATTGTCGAAACAACAACCTTCGGGCGGCTGGGGAGAAA 2154
Query 1981 GCTATCTTTCATGTCAAGACAAGGTCTATTCAAACCTTGAAGGCAACAGGTCTCATGTTG 2040
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |
Sbjct 2155 GCTATCTTTCATGTCAAGACAAGGTCTATTCAAACCTTGATGGCAACAGATCTCACGTCG 2214
Query 2041 TGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAAGCTGAGGTAGATCAAA 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2215 TGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAAGCTGAGGTAGACCGGA 2274
Query 2101 AACCACTAGACCGGGCTGCAAGATACTTGATTAATGCTCAGATGGAGAATGGTGATTTTC 2160
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2275 AACCACTACACCGGGCTGCAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTC 2334
Query 2161 CACAACAGGAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCTGCATATC 2220
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2335 CACAACAGGAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTATC 2394
Query 2221 GAAACATTTTTCCGATATGGGCATTGGGGGAGTACCGTTGCCAGGTATTATTGCAACAAG 2280
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2395 GAAACATTTTTCCGATATGGGCTTTGGGGGAGTACCGTTGTCAGGTATTATTGCAACAAG 2454
Query 2281 GAGAATGAATGAAGTGTTCAAAGGAATTATTTCTCTAGGGAAGGAACTGTGT---TTAC- 2336
|||||||||| ||||||||||| | |||||||||||||||||||||||||| || |
Sbjct 2455 GAGAATGAATTAAGTGTTCAAATTAGTTATTTCTCTAGGGAAGGAACTGTGTAGCTTCCA 2514
Query 2337 T--TTT-C-CT----AAAGTTGTGTTATCCGTAACTCGGATCTGCTCTGATGCTTTCGTG 2388
| ||| | || ||||||||||||||||||| | ||||||||||||||| || ||||
Sbjct 2515 TGCTTTACTCTTTCCAAAGTTGTGTTATCCGTAA-T-GGATCTGCTCTGATGGTTACGTG 2572
Query 2389 AACCAATCTCTCTGTAATT-TACTT-AAACTCAAATCTTGGTTGCAGATTTTGTTGGGTT 2446
||||||||| | ||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 2573 AACCAATCTTTGTGTAATTGT--TTCAAACTCAAATCTTGGTTGCAGATTTTGTTGGGTT 2630
Query 2447 CTCTTGAATAGTTGAATACCGATTTTAGGATAATGTCTT-TTT-GTGAAAACAGACACAT 2504
|||||||||| || |||||||||||||||||| ||| ||||||||||||| |
Sbjct 2631 CTCTTGAATACC------CC-ATTTTAGGATAATGTCTTGTTTTGTGAAAACAGACATTT 2683
Query 2505 T-CTTGTATTCGGCTTTCAAAT-CATGTTT 2532
| |||||||| | ||| ||| |||||||
Sbjct 2684 TTCTTGTATTTGTTTTTTTAATTCATGTTT 2713
> AT3G29255.1 | Symbols: | catalytics;intramolecular transferases
| chr3:11209586-11213909 FORWARD LENGTH=2121
Length=2121
Score = 62.1 bits (33), Expect = 3e-08
Identities = 75/94 (80%), Gaps = 8/94 (9%)
Strand=Plus/Plus
Query 2142 ATGGAGAATGGTGATTTTCCACAACAGGAAATAATG-GGAGTCTT-CAATAGGAAC-TGC 2198
|||||||||||||||||||||||||||||| | | | ||||| || ||| | ||| |||
Sbjct 1981 ATGGAGAATGGTGATTTTCCACAACAGGAACTTA-GAGGAGT-TTACAAGATGAATGTGC 2038
Query 2199 ATGATAACAT-ATGCTGCATATCGAAACATTTTT 2231
|| || ||| || | | ||| |||||||||||
Sbjct 2039 -TGCTA-CATTATCCAACCTATAGAAACATTTTT 2070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129882215427
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5