BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480233
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07180.1 | Symbols: | Protein kinase superfamily protein | ... 2444 0.0
> AT2G07180.1 | Symbols: | Protein kinase superfamily protein
| chr2:2980899-2983495 REVERSE LENGTH=1736
Length=1736
Score = 2444 bits (1323), Expect = 0.0
Identities = 1579/1698 (93%), Gaps = 35/1698 (2%)
Strand=Plus/Plus
Query 1 tctctctctctcCGACCTCCTCCGAGAAACCCATCTCT-CT--TCC-----T--CC---- 46
||||||| |||||||||||||||||||||||||||||| || ||| | ||
Sbjct 39 TCTCTCTTTCTCCGACCTCCTCCGAGAAACCCATCTCTCCTCCTCCATTTTTGCCCTTGG 98
Query 47 A-TTTTATCAGCCAGTTTCTCGGAGTCTCGTC-G-GAGATCGGAG----CtttttttttC 99
| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||||
Sbjct 99 AGTTTCATCAGCAAGTTTCTCGGAGTCTCGTCGGAGAGATCGGAGTTTTTTTTTTTTTTT 158
Query 100 TTT-GTGGATCTGTCGACAATGTGATGGGAATCGAATAGCAGATAACGC-GAGAGAGttt 157
||| ||||||||||||| |||||||||||||| |||| |||| ||||| ||||||| |
Sbjct 159 TTTCCTGGATCTGTCGACTATGTGATGGGAATCCAATAACAGAGAACGCAGAGAGAG-TG 217
Query 158 ttttCGGATGGGGATTTGCTTTAGCGCTGAAGATCAGCAGTACCAATTTTCTCAACAACA 217
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 218 TTTTCGGATGGGGATTTGCTTTAGCGCTGAAGATCAGCACTACCAATTTTCTCAACAACA 277
Query 218 AAACTATCAGAAGAAAACAACACCAGGGAAAAATTCAGCAGTGTATCTAATGAAGTCAGA 277
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 278 AAACTATCCTAAGAAAACAACTCCAGGGAAAAAAGCAGCAGTGTATCTAATGAAGTCAGA 337
Query 278 TTGTCAAGAT-TCAGTTGGTAAAGTGAGTGCAAGT-G--GTGGTGGTGGTGGCTTGCCTT 333
|||| ||||| | ||||||||||||||||| |||| | ||||||||||||| ||||| |
Sbjct 338 TTGTGAAGATGT-AGTTGGTAAAGTGAGTGGAAGTGGAAGTGGTGGTGGTGGTTTGCCAT 396
Query 334 TGGCTCCTAAAAACATTAAAGATCTTCAGTCTAATCCAGGTTATGAAAATGTTGATATTT 393
||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 397 TGGCTCCAAAAAACATTAAAGATCTTCAATCAAATCCAGGATATGAAAATGTTGATATTT 456
Query 394 TCACTTACCAAGAGATGAAGATTGCTACTAAGCAGTTCAGGCCTGATTATATTCTCGGCG 453
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 457 TCACTTACGAAGAGATGAAGATTGCTACTAAGCAGTTCAGGCCGGATTATATTCTCGGTG 516
Query 454 AGGGAGGTTTCGGAGTGGTGTATAAAGGAGTTATAGATGAGTCTGTCAGGGCTGGTTACA 513
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 517 AGGGAGGTTTCGGAGTGGTGTATAAAGGAGTTATAGATGAGTCTGTGAGGGTTGGTTTCA 576
Query 514 AGTCTACAAAAGTTGCTATCAAAGAACTTAATCCAGAGGGCTTCCAGGGAGATAGAGAGT 573
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 577 AGTCTACAAAAGTTGCTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGT 636
Query 574 GGCTGGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTTAAGCTCATAG 633
||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 637 GGCTGGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTTATTG 696
Query 634 GCTACTGCTGTGAAGATGATCACAGGTTATTAGTCTATGAATATATGGCAATGGGGAG-C 692
|||||||||||||||||||||| || || |||||||||||||| |||||||||||||| |
Sbjct 697 GCTACTGCTGTGAAGATGATCATAGATTGTTAGTCTATGAATACATGGCAATGGGGAGCC 756
Query 693 TTGGAGAAACATCTTTTCCGAAGAGTTGGATGCACTTTGACATGGTCGAAAAGAATGAAG 752
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 757 TT-GAGAAACATCTTTTCCGAAGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAG 815
Query 753 ATTGCGCTAGACGCAGCCAAGGGTCTTGCATTTCTTCATGGTGCTGAACGCTCCATCATA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ATTGCGCTAGACGCAGCCAAGGGTCTTGCATTTCTTCATGGTGCTGAACGCTCCATCATA 875
Query 813 TATCGGGATCTGAAGACAGCAAATATATTGCTGGATGAGGGTTACAATGCTAAACTCTCT 872
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 876 TACCGGGATCTGAAGACAGCAAATATATTGCTTGATGAGGGTTACAATGCTAAACTCTCT 935
Query 873 GACTTTGGACTGGCAAAGGATGGTCCAAGAGGAGATCAAACACATGTGTCAACACGTGTT 932
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 936 GACTTTGGACTGGCAAAGGATGGTCCAAGAGGAGACCAAACACATGTGTCTACACGTGTT 995
Query 933 ATGGGGACTTACGGATACGCTGCTCCTGAGTATGTAATGACAGGACATTTGACATCCAGA 992
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 996 ATGGGGACTTACGGATACGCTGCTCCAGAGTATGTCATGACAGGGCATTTGACATCCAGA 1055
Query 993 AGTGATGTTTATGGATTTGGAGTACTTCTCCTTGAGATGCTCCTTGGGAAGAGGGCGATG 1052
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 1056 AGTGATGTGTATGGATTCGGTGTACTTCTCCTTGAGATGCTCCTTGGGAAGAGGGCAATG 1115
Query 1053 GACAAAAGCAGACCTTGCAGGGAGCATAACTTGGTAGAGTGGGCACGACCACTATTGAAT 1112
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1116 GACAAAAGCAGAGCTTGCAGGGAGCATAACTTGGTAGAGTGGGCACGACCTCTTTTGAAT 1175
Query 1113 CACAACAAAAAGCTTTTGAGGATCATAGACCCTCGAATGGATGGACAGTACGGCACTAAG 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 CACAACAAAAAGCTTTTGAGGATCATAGACCCTCGAATGGATGGACAGTACGGCACTAAG 1235
Query 1173 GCGTTGATGAAAGTAGCTGGTTTGGCATACCAATGCCTAAGTCAAAACCCGAAAGGAAGG 1232
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1236 GCGTTGATGAAAGTAGCTGGTTTGGCATACCAATGCCTAAGCCAAAACCCGAAAGGAAGG 1295
Query 1233 CCTCTCATGAATCATGTTGTAGAAGTTCTTGAGACTCTCAAGGAAGACGGAGATGCTCAG 1292
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1296 CCTCTCATGAATCATGTTGTAGAAGTTCTTGAGACTCTCAAGGACGACGGAGATGCTCAG 1355
Query 1293 GAGGAAGTCATGACTAATCTCCATAGCAGGGGCAAGTCCGTAACCTTATATGAAGCATCT 1352
|||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||
Sbjct 1356 GAGGAAGTCATGACTAATCTTCATAGTAGGGGAAAGTCTGTAACCTTATATGAAGCTTCT 1415
Query 1353 AGTGATTCCCAAGGCACAAGAGATGGAGA-TGGACAGAGGAGGAGAAGACCGGAAAGTGG 1411
|| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1416 AGCGATTCTCAAGGCACAAGAGATGG-GAATGGACAGAGGAGGAGAAGACCGGAAAGTGG 1474
Query 1412 TAGAAGCAAGAGCGAAGCCTCAGTTGACACCGACAAATATGTTTCTGCTCTTTCAGAACC 1471
||||||||||||||||||| | || ||||| || |||||||||||| ||||||| |||||
Sbjct 1475 TAGAAGCAAGAGCGAAGCCGCGGTCGACACTGAAAAATATGTTTCTACTCTTTCGGAACC 1534
Query 1472 GGATACTACCAAAATTTAAGACTCAAAACAGAAAGATTCACCGGTGATTTGAGACTGTAA 1531
|||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||
Sbjct 1535 GGATACTACCAAAATTTAAGACTCAAGACAGAATGATTCACCAGTGATTTGAGACTGTAA 1594
Query 1532 GATAAGAAAGTAGCAGAGTTGGCTTAAA-TGTATAAATAAGTTGAGTCTTGGTTTTGGGA 1590
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 1595 GATAAGAAAGTAGCAGAGTTGGCTTAAAATGTATAAATAAGTTGAGTCTTCGTTTCGGGT 1654
Query 1591 TCTTCtt-tttttGGATTACAAATATTAGTGCATTACACAATTTGATGTTTCTTTGAAAT 1649
||||||| |||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1655 TCTTCTTCTTTTTGAATTACAAATATTAGTGCAATATGCAATTTGATGTTTCTTTGAAAT 1714
Query 1650 TCAAATGAATTTTGGAGA 1667
||||||||||||||||||
Sbjct 1715 TCAAATGAATTTTGGAGA 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82379094345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5