BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480234

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07340.1 | Symbols: PFD1 | PREFOLDIN 1 | chr2:3045559-304674...   763    0.0  


> AT2G07340.1 | Symbols: PFD1 | PREFOLDIN 1 | chr2:3045559-3046743 
FORWARD LENGTH=609
Length=609

 Score =  763 bits (413),  Expect = 0.0
 Identities = 457/478 (96%), Gaps = 4/478 (1%)
 Strand=Plus/Plus

Query  2    TTTTTCACCCTAAAACGAAAGACCCTTCTCTAGCACGTCGGAGTT-G--GGAAGATCAAG  58
            ||||| ||||||||||||||||||||||||||||||||||| ||| |    |||||||||
Sbjct  16   TTTTTGACCCTAAAACGAAAGACCCTTCTCTAGCACGTCGGGGTTCGTTCAAAGATCAAG  75

Query  59   ATCTGCAGACATGGCGGACGAAGCAACCAGAGCTGCTTTTATGGAGATTCAAGCAAGTAT  118
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  76   ATCTGCAGACATGGCGGACGAAGCAACCAGAGCTGCTTTTATGGAGATTCAAGCTAGCAT  135

Query  119  GATTGAACTCACTGGGAAGCTGAAACAGGTGCAGAATCAGATGCGCAACAAAGAGGGAGA  178
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  136  GATTGAACTCACTGGGAAGCTCAAACAGGTGCAGAATCAGATGCGCAACAAAGAGGGAGA  195

Query  179  TAGAAAGCGAGCTTTCTTAACCTTGGAGGAGCTGAGGCCATTGCCTGAGGATACAAACAC  238
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  196  TAGAAAGCGAGCTTTCTTAACCTTGGAGGAGCTGAGGCCATTGCCTGAAGAGACAAACAC  255

Query  239  CTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACA  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  256  CTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACA  315

Query  299  AGAGCAAAAACTCAAGGACAGTGAGGCTGCTGTTGCTTCTCTACAGACATCGAAGGAATA  358
            |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct  316  AGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGACATCCAAGGAATA  375

Query  359  CTTGGAGAAGCAGACAGCAGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAGCAAGAACC  418
            |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  376  CTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGAGGGAGCTGTTGCAGCAAGAACC  435

Query  419  GGGCATTGCTCAACAGATAATGTCCATGTCTATGTAATTTTTGTATTATCC-AAACCT  475
            |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||
Sbjct  436  GGGCATTGCTCAACAGATTATGTCCATGTCTATGTAACTTTTGTATTATCCCAAACCT  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22605366150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5