BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480239
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22650.1 | Symbols: | FAD-dependent oxidoreductase family p... 2108 0.0
> AT2G22650.1 | Symbols: | FAD-dependent oxidoreductase family
protein | chr2:9624586-9626969 REVERSE LENGTH=1418
Length=1418
Score = 2108 bits (1141), Expect = 0.0
Identities = 1259/1317 (96%), Gaps = 3/1317 (0%)
Strand=Plus/Plus
Query 1 GGAATCCAAAGGCATTGTCGTGTAGACATGACCACTGCTGTTTTTCAGCCTTCTTCTTCG 60
||||||||||||||||| ||||||||||||| |||||||||| |||| |||| |||||||
Sbjct 12 GGAATCCAAAGGCATTGGCGTGTAGACATGATCACTGCTGTTCTTCACCCTTGTTCTTCG 71
Query 61 GCATCTCTCTCTCTTCCCAACCGTCCTCCTCTTAGGTACGCCGTCCTTGGTGCGGGTTTT 120
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 72 GCGTCTCTCTCTCTTCCCAACCGTCCTCCTCTTAGGTACGCCATCCTTGGTGCAGGTTTT 131
Query 121 GCTGGAATCTCTGTTGCCTGGCACCTGCTTAAGGACAGTCCAAAAGAGCTGAGATTAAGT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 132 GCTGGAATCTCTGTTGCCTGGCACCTGCTTAAGGAGAGTCCAAAAGAGCTGAGATTAAGT 191
Query 181 GTTGACGTATATGATGAAGTTGGCATAGGAGGTGGGGCTTCTGGTGTCTCTGGAGGACTC 240
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 192 GTTGACGTATATGATGAAGTTGGCATAGGAGGTGGTGCTTCTGGTGTTTCTGGAGGACTC 251
Query 241 CTCCACCCTTATTCTCCTAAAGGGAAGCTACTTTGGCATGGTGCTGAGTGTTGGAGAGAA 300
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 252 CTCCATCCTTATTCTCCTAAAGGAAAGCTACTTTGGCATGGTGCTGAGTGTTGGAGAGAA 311
Query 301 TGTTTAGAGCTCTTAAATGTGGCCGAAACAGCTGCTTCTTCTAGTTACCCAGCTACGGAG 360
||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 312 TGTTTAGAGCTCTTAAATGTGGCTGAAACAGCTGCTTCTTCTAGTTACCAATCTACGGAG 371
Query 361 AACGGAGACTCTAGCGAGAGTTTCGGAAATTTTATGGTTCGAAGAAGGGGAATCTTGAGA 420
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 AACAGAGACTTTAGCGAGAGTTTCGGAAATTTTATGGTTCGAAGAAGGGGAATCTTGAGA 431
Query 421 CCAGCAACAAATGCCAAGACTTTAGATTTAATGAGTGATAATGCTCGAAACTGTCTTGCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CCAGCAACAAATGCCAAGACTTTAGATTTAATGAGTGATAATGCTCGAAACTGTCTTGCT 491
Query 481 AGTTGTGTAGTAGAGACTATTGACAAAGATGGTGCACGAAATCTTGTCCCCAATCTATAC 540
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 492 AGTTGTGTAGTAGAGACTATTGACAAAGATGGTGCACAAAATCTCGTCCCCAATCTATAC 551
Query 541 CTGCCTTTGAACTGCGCCTTCTATTTTCCAGGAGCTATGAATGTTAATCCACAGCAATAT 600
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 552 CTGCCTTTGAACTGCGCCTTCTATTTTCCAGGAGCTATGAATGTTAATCCGCACCGATAT 611
Query 601 CTCCAGGCACTCTTTCTAGCATGCCAGAACTCCGCAAGAGCATCACTTGGAAGGAAAAAC 660
|||||||||||||||||||||||||||| ||| |||| | ||||||| ||||||||||||
Sbjct 612 CTCCAGGCACTCTTTCTAGCATGCCAGAGCTCAGCAAAAACATCACTGGGAAGGAAAAAC 671
Query 661 ATAACTTTGGTGAAGAAATCTATAAGTGATGTGCTTGAACTTGAAGGAGAATATGATGCA 720
|||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 672 ATAACTTTGGTGAACAAGTCTATAACTGATGTGCTTGAACTTGAAGGAGGATATGATGCA 731
Query 721 GTAGTAATATGTCTTGGATCCAAGGTAGACTTTCTTCCAGGGCTTACTGGCAAGCTCCCT 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 732 GTAGTAATATGTCTTGGATCCAAGGTAGACTTTCTTCCAGGGCTTACTGGAAAGCTCCCT 791
Query 781 TTAAGGACATGCCGAGGTGTCATTACTCATATGCAGTTACACGAGAGTGCCAGAGGAAGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TTAAGGACATGCCGAGGTGTCATTACTCATATGCAGTTACACGAGAGTGCCAGAGGAAGT 851
Query 841 TACCCGGACGATGGACCTTCGATCTTGTCAGATGCGTGGCTTGCGGTTCAGGGACCTCGT 900
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 852 TACCCGGACGATGGACCTTCGATCTTGTCAGATGCGTGGCTCGCGGTTCAGGGACCCCGT 911
Query 901 AATCTACACATGGGATCCACATGGGAATGGCAATCAAGAAATTATTCATCGGATGTCCCA 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 AATCTGCACATGGGATCCACATGGGAATGGCAATCAAGAAATTATTCATCGGATGTCCCA 971
Query 961 GCAGAGGAAGCTTCAAGAGCTCTCGACGAGCTTCTTCCGAAAGCAAGTACAGTTTATCCA 1020
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 972 GCAGAGGAAGCTTCAAGAGCTCTCAACGAGCTTCTTCCGAAAGCAAGTGCAGTTTATCCA 1031
Query 1021 GACATAGAGAAGTGGAAATTTGCGGGAGCAAGGGCAGGTTTGAGAGCAATGCCACCTGTC 1080
|||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1032 GACATAGAAAAGTGGGAATTTGCGGGAGCAAGGGCGGGCTTGAGAGCAATGCCACCTGTC 1091
Query 1081 ACAAGCCATGGGTCACTGCCGCTCTTGGGATGTGTAAATCAGCTCATAGGTGCAGCAGGT 1140
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | | |
Sbjct 1092 ACAAGCCATGGATCACTGCCGCTCTTGGGATGTGTTAATCAGCTCATAGGTGCTG--G-T 1148
Query 1141 GAGTCTTGCAAATTCTGGGTATTTTCAGGGCTCGGATCAAGGGGATTACTCTATCATGCT 1200
||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1149 CAGTTTTGCAACTTCTGGGTATTTTCAGGGCTCGGATCAAGGGGACTACTCTATCATGCT 1208
Query 1201 TGGCTTGGGAAACTCATGGCTAAAGCTGTTTTAAGTTGCAAGGAAGAATTAATTCCTTCT 1260
|||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1209 TGGCTTGGGAAACTCATGTCTAAAGCTGTTTTAAGTTGCAATGAAGAATTACTTCCTTCT 1268
Query 1261 GAACTAACTTCTTGGAAGAAAAACAGACTATAAGAGTACTTTTGTTTACTTCTCAGT 1317
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1269 GAACTAACTTCTTGGAAGAAAAACAGACAATAAGAGTACCATTGTTTACTTCTCAGT 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5