BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480247

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00540.1 | Symbols: ORF102B | hypothetical protein | chrM:15...   490    4e-138
  AT2G07713.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   490    4e-138


> ATMG00540.1 | Symbols: ORF102B | hypothetical protein | chrM:150783-151151 
FORWARD LENGTH=369
Length=369

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 274/278 (99%), Gaps = 1/278 (0%)
 Strand=Plus/Plus

Query  63   CAAAAGCCAGCA-AATAAGCGAAGTAAACCGTGAGTTAAGCGTCCCTCGCGTTTACCGTG  121
            |||| |||  || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  92   CAAAGGCCCTCAGAATAAGCGAAGTAAACCGTGAGTTAAGCGTCCCTCGCGTTTACCGTG  151

Query  122  AGAAGAGTTTCACGCGGCGGCTAAACGCACCTATTTTTGGCAGCCTATTCGTAGACAAAG  181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  AGAAGAGTTTCACGCGGCGGCTAAACGCACCTATTTTTGGCAGCCTATTCGTAGACAAAG  211

Query  182  AAAGCCGATTCGCTAATCCTTATTCCTTTACTTTGAATCAAGGTCTTACCCGAGGAAGAG  241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  AAAGCCGATTCGCTAATCCTTATTCCTTTACTTTGAATCAAGGTCTTACCCGAGGAAGAG  271

Query  242  GGAAGCAAGCAAAGCTTGCCCCGGATCGTAGGGGAAAGAGTGTTGTAACCGAAGTAGACT  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  GGAAGCAAGCAAAGCTTGCCCCGGATCGTAGGGGAAAGAGTGTTGTAACCGAAGTAGACT  331

Query  302  ACCGAACGGGTGTGGGGGAGAATATCGTCAAAGATTGA  339
            ||||||||||||||||||||||||||||||||||||||
Sbjct  332  ACCGAACGGGTGTGGGGGAGAATATCGTCAAAGATTGA  369


 Score =  130 bits (70),  Expect = 9e-30
 Identities = 73/74 (99%), Gaps = 1/74 (1%)
 Strand=Plus/Plus

Query  1   ATGTACCGATATGAAATCTCCTGCCCCTTCAACCTAAGGAAGTCCGGCAGTACCCGTCTC  60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1   ATGTACCGATATGAAATCTCCTGCCCCTTCAACCTAAGG-AGTCCGGCAGTACCCGTCTC  59

Query  61  ATCAAAAGCCAGCA  74
           ||||||||||||||
Sbjct  60  ATCAAAAGCCAGCA  73


> AT2G07713.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:ATMG00540.1); Has 6 Blast 
hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:3407218-3407586 FORWARD 
LENGTH=369
Length=369

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 274/278 (99%), Gaps = 1/278 (0%)
 Strand=Plus/Plus

Query  63   CAAAAGCCAGCA-AATAAGCGAAGTAAACCGTGAGTTAAGCGTCCCTCGCGTTTACCGTG  121
            |||| |||  || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  92   CAAAGGCCCTCAGAATAAGCGAAGTAAACCGTGAGTTAAGCGTCCCTCGCGTTTACCGTG  151

Query  122  AGAAGAGTTTCACGCGGCGGCTAAACGCACCTATTTTTGGCAGCCTATTCGTAGACAAAG  181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  AGAAGAGTTTCACGCGGCGGCTAAACGCACCTATTTTTGGCAGCCTATTCGTAGACAAAG  211

Query  182  AAAGCCGATTCGCTAATCCTTATTCCTTTACTTTGAATCAAGGTCTTACCCGAGGAAGAG  241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  AAAGCCGATTCGCTAATCCTTATTCCTTTACTTTGAATCAAGGTCTTACCCGAGGAAGAG  271

Query  242  GGAAGCAAGCAAAGCTTGCCCCGGATCGTAGGGGAAAGAGTGTTGTAACCGAAGTAGACT  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  GGAAGCAAGCAAAGCTTGCCCCGGATCGTAGGGGAAAGAGTGTTGTAACCGAAGTAGACT  331

Query  302  ACCGAACGGGTGTGGGGGAGAATATCGTCAAAGATTGA  339
            ||||||||||||||||||||||||||||||||||||||
Sbjct  332  ACCGAACGGGTGTGGGGGAGAATATCGTCAAAGATTGA  369


 Score =  130 bits (70),  Expect = 9e-30
 Identities = 73/74 (99%), Gaps = 1/74 (1%)
 Strand=Plus/Plus

Query  1   ATGTACCGATATGAAATCTCCTGCCCCTTCAACCTAAGGAAGTCCGGCAGTACCCGTCTC  60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1   ATGTACCGATATGAAATCTCCTGCCCCTTCAACCTAAGG-AGTCCGGCAGTACCCGTCTC  59

Query  61  ATCAAAAGCCAGCA  74
           ||||||||||||||
Sbjct  60  ATCAAAAGCCAGCA  73



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5