BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480257
Length=357
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07676.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 654 0.0
ATMG00970.1 | Symbols: ORF117 | hypothetical protein | chrM:258... 640 0.0
> AT2G07676.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:ATMG00970.1);
Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:3272619-3272975
FORWARD LENGTH=357
Length=357
Score = 654 bits (354), Expect = 0.0
Identities = 356/357 (99%), Gaps = 0/357 (0%)
Strand=Plus/Plus
Query 1 ATGGTAGCTTCTGATTCACGGCCAATGAGACTCCGCTTGCGAGCTGAACTCTTTTTGGCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTAGCTTCTGATTCACGGCCAATGAGACTCCGCTTGCGAGCTGAACTCTTTTTGGCA 60
Query 61 TCATTCGCAGTGAGAGAAGAGAGCATACGCAGTGAAGAAGGGAGTGGAGCTTATATTTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATTCGCAGTGAGAGAAGAGAGCATACGCAGTGAAGAAGGGAGTGGAGCTTATATTTCA 120
Query 121 AAGTATATTAAAGGTATTCTAAAATCAAGATTATCCCGACGTGAGCAGTCACGCTGGAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGTATATTAAAGGTATTCTAAAATCAAGATTATCCCGACGTGAGCAGTCACGCTGGAAT 180
Query 181 ATAATAGATGATACAACTTCTATGGCTTTCTTTGAAGAATTTGCGTCTCTTAATCCAGTT 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATAATAGATGATACAACTTATATGGCTTTCTTTGAAGAATTTGCGTCTCTTAATCCAGTT 240
Query 241 TTTCATACTTTCTTATTTTACGGGAGGAGAGACGGAGAAGATCTTTCTTTTCACATTGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTCATACTTTCTTATTTTACGGGAGGAGAGACGGAGAAGATCTTTCTTTTCACATTGTT 300
Query 301 GGGTTTTTTCGTCTATCGATACGGGGTTACATATTCTTTTTATGGGAAAGCTTTTAG 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGGTTTTTTCGTCTATCGATACGGGGTTACATATTCTTTTTATGGGAAAGCTTTTAG 357
> ATMG00970.1 | Symbols: ORF117 | hypothetical protein | chrM:258045-258398
REVERSE LENGTH=354
Length=354
Score = 640 bits (346), Expect = 0.0
Identities = 354/357 (99%), Gaps = 3/357 (1%)
Strand=Plus/Plus
Query 1 ATGGTAGCTTCTGATTCACGGCCAATGAGACTCCGCTTGCGAGCTGAACTCTTTTTGGCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTAGCTTCTGATTCACGGCCAATGAGACTCCGCTTGCGAGCTGAACTCTTTTTGGCA 60
Query 61 TCATTCGCAGTGAGAGAAGAGAGCATACGCAGTGAAGAAGGGAGTGGAGCTTATATTTCA 120
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 61 TCATTCGCAGTGAGAGAAGAGAGCATACGCAGT-AAGAA-GGAGTGGA-CTTATATTTCA 117
Query 121 AAGTATATTAAAGGTATTCTAAAATCAAGATTATCCCGACGTGAGCAGTCACGCTGGAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAGTATATTAAAGGTATTCTAAAATCAAGATTATCCCGACGTGAGCAGTCACGCTGGAAT 177
Query 181 ATAATAGATGATACAACTTCTATGGCTTTCTTTGAAGAATTTGCGTCTCTTAATCCAGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATAATAGATGATACAACTTCTATGGCTTTCTTTGAAGAATTTGCGTCTCTTAATCCAGTT 237
Query 241 TTTCATACTTTCTTATTTTACGGGAGGAGAGACGGAGAAGATCTTTCTTTTCACATTGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTCATACTTTCTTATTTTACGGGAGGAGAGACGGAGAAGATCTTTCTTTTCACATTGTT 297
Query 301 GGGTTTTTTCGTCTATCGATACGGGGTTACATATTCTTTTTATGGGAAAGCTTTTAG 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGGTTTTTTCGTCTATCGATACGGGGTTACATATTCTTTTTATGGGAAAGCTTTTAG 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16739160417
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5