BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480266
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00900.1 | Symbols: CCB256 | cytochrome C biogenesis 256 | c... 1415 0.0
AT2G07771.2 | Symbols: | Cytochrome C assembly protein | chr2:... 1415 0.0
AT2G07681.1 | Symbols: | Cytochrome C assembly protein | chr2:... 1101 0.0
AT2G07742.1 | Symbols: | pre-tRNA | chr2:3239657-3239728 REVER... 63.9 2e-09
AT2G07778.1 | Symbols: | pre-tRNA | chr2:3290966-3291037 FORWA... 63.9 2e-09
ATCG00850.1 | Symbols: TRNI.1 | tRNA-Ile | chrC:86312-86385 REV... 60.2 3e-08
ATCG01290.1 | Symbols: TRNI.4 | tRNA-Ile | chrC:152264-152337 F... 60.2 3e-08
> ATMG00900.1 | Symbols: CCB256 | cytochrome C biogenesis 256 |
chrM:239988-240758 REVERSE LENGTH=771
Length=771
Score = 1415 bits (766), Expect = 0.0
Identities = 768/769 (99%), Gaps = 0/769 (0%)
Strand=Plus/Plus
Query 1 ATGTCCGTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTACGCGCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCCGTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTACGCGCAA 60
Query 61 ATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTGGGGTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTGGGGTA 120
Query 121 GCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCTCTATGTACATGTTCCTGCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCTCTATGTACATGTTCCTGCG 180
Query 181 GCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAACACTTTCTTGTTCCTATTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAACACTTTCTTGTTCCTATTA 240
Query 241 ACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTATAGAAATGGGTGCttttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTATAGAAATGGGTGCTTTTTTT 300
Query 301 ACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCAATGTGGGGGACCTTTTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCAATGTGGGGGACCTTTTGG 360
Query 361 GTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCTTATTTACCTGGGTGCACTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCTTATTTACCTGGGTGCACTG 420
Query 421 TGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATTCGTGCTGGACCGATCGAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATTCGTGCTGGACCGATCGAT 480
Query 481 ATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATT 540
Query 541 AGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCT 600
Query 601 AACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCT 660
Query 661 TTTCTCGAATCTCCTATAACGGAAGAAATTGAAGCTCGAGAAGGAATACCAAAACCTAGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTCTCGAATCTCCTATAACGGAAGAAATTGAAGCTCGAGAAGGAATACCAAAACCTAGT 720
Query 721 TCACTCGCTCTCTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACCT 769
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCACTCGCTCTCTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACCT 769
> AT2G07771.2 | Symbols: | Cytochrome C assembly protein | chr2:3239693-3240463
REVERSE LENGTH=771
Length=771
Score = 1415 bits (766), Expect = 0.0
Identities = 768/769 (99%), Gaps = 0/769 (0%)
Strand=Plus/Plus
Query 1 ATGTCCGTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTACGCGCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCCGTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTACGCGCAA 60
Query 61 ATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTGGGGTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTGGGGTA 120
Query 121 GCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCTCTATGTACATGTTCCTGCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCTCTATGTACATGTTCCTGCG 180
Query 181 GCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAACACTTTCTTGTTCCTATTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAACACTTTCTTGTTCCTATTA 240
Query 241 ACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTATAGAAATGGGTGCttttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTATAGAAATGGGTGCTTTTTTT 300
Query 301 ACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCAATGTGGGGGACCTTTTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCAATGTGGGGGACCTTTTGG 360
Query 361 GTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCTTATTTACCTGGGTGCACTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCTTATTTACCTGGGTGCACTG 420
Query 421 TGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATTCGTGCTGGACCGATCGAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATTCGTGCTGGACCGATCGAT 480
Query 481 ATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATT 540
Query 541 AGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCT 600
Query 601 AACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCT 660
Query 661 TTTCTCGAATCTCCTATAACGGAAGAAATTGAAGCTCGAGAAGGAATACCAAAACCTAGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTCTCGAATCTCCTATAACGGAAGAAATTGAAGCTCGAGAAGGAATACCAAAACCTAGT 720
Query 721 TCACTCGCTCTCTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACCT 769
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCACTCGCTCTCTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACCT 769
> AT2G07681.1 | Symbols: | Cytochrome C assembly protein | chr2:3287552-3292366
FORWARD LENGTH=2291
Length=2291
Score = 1101 bits (596), Expect = 0.0
Identities = 600/602 (99%), Gaps = 0/602 (0%)
Strand=Plus/Plus
Query 42 GACCAGAAGCTACGCGCAAATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTAT 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 GACCAGAAGCTACGCGCAAATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTAT 1285
Query 102 TCATTTAAGTCTTGGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCT 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TCATTTAAGTCTTGGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCT 1345
Query 162 CTATGTACATGTTCCTGCGGCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAA 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 CTATGTACATGTTCCTGCGGCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAA 1405
Query 222 CACTTTCTTGTTCCTATTAACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTAT 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 CACTTTCTTGTTCCTATTAACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTAT 1465
Query 282 AGAAATGGGTGCtttttttACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACC 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 AGAAATGGGTGCTTTTTTTACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACC 1525
Query 342 AATGTGGGGGACCTTTTGGGTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 AATGTGGGGGACCTTTTGGGTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCT 1585
Query 402 TATTTACCTGGGTGCACTGTGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAAT 461
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TATTTACCTGGGTGCACTGCGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAAT 1645
Query 462 TCGTGCTGGACCGATCGATATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATC 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 TCGTGCTGGACCGATCGATATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATC 1705
Query 522 GCATCAACCTGGGAGCATTAGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCC 581
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1706 GCATCAACCTGGGAGCATTAGCCGATCTAGTACATCAATACATGTTCCTATGCCCATTCC 1765
Query 582 AATCTTGTCTAACTTTGCTAACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAAC 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 AATCTTGTCTAACTTTGCTAACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAAC 1825
Query 642 AC 643
||
Sbjct 1826 AC 1827
> AT2G07742.1 | Symbols: | pre-tRNA | chr2:3239657-3239728 REVERSE
LENGTH=72
Length=72
Score = 63.9 bits (34), Expect = 2e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 736 GCATCCATGGCTGAATGGTTAAAGCGCCCAACCT 769
||||||||||||||||||||||||||||||||||
Sbjct 1 GCATCCATGGCTGAATGGTTAAAGCGCCCAACCT 34
> AT2G07778.1 | Symbols: | pre-tRNA | chr2:3290966-3291037 FORWARD
LENGTH=72
Length=72
Score = 63.9 bits (34), Expect = 2e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 736 GCATCCATGGCTGAATGGTTAAAGCGCCCAACCT 769
||||||||||||||||||||||||||||||||||
Sbjct 1 GCATCCATGGCTGAATGGTTAAAGCGCCCAACCT 34
> ATCG00850.1 | Symbols: TRNI.1 | tRNA-Ile | chrC:86312-86385 REVERSE
LENGTH=74
Length=74
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 736 GCATCCATGGCTGAATGGTTAAAGCGCCCAAC 767
||||||||||||||||||||||||||||||||
Sbjct 1 GCATCCATGGCTGAATGGTTAAAGCGCCCAAC 32
> ATCG01290.1 | Symbols: TRNI.4 | tRNA-Ile | chrC:152264-152337
FORWARD LENGTH=74
Length=74
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 736 GCATCCATGGCTGAATGGTTAAAGCGCCCAAC 767
||||||||||||||||||||||||||||||||
Sbjct 1 GCATCCATGGCTGAATGGTTAAAGCGCCCAAC 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5