BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480275

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07772.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   837    0.0  


> AT2G07772.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:3300978-3301804 
REVERSE LENGTH=540
Length=540

 Score =  837 bits (453),  Expect = 0.0
 Identities = 453/453 (100%), Gaps = 0/453 (0%)
 Strand=Plus/Plus

Query  1    TTAGGGGAAGGTGGATTAGGTCAGTTGGTTAGGGATGTGAGGAAAGGAAGGGAAGGTTGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  88   TTAGGGGAAGGTGGATTAGGTCAGTTGGTTAGGGATGTGAGGAAAGGAAGGGAAGGTTGG  147

Query  61   GCCAGGCAAGCTAGGGAAGTTGAGAAGGTTGGGCTAGGGAAGTTGGGAGTTGGTGTTTCC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  GCCAGGCAAGCTAGGGAAGTTGAGAAGGTTGGGCTAGGGAAGTTGGGAGTTGGTGTTTCC  207

Query  121  CTTGTTCCCAAAAAAGACAAGGCTGAGTTGCCCCTTCTACCATCTGAGGTGGAATACGGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  208  CTTGTTCCCAAAAAAGACAAGGCTGAGTTGCCCCTTCTACCATCTGAGGTGGAATACGGA  267

Query  181  TCAAGATTTGCTGAGTATCTCTTGATCGAAGGGTTCAAGCCGCTAAAGCGGAAAGATATA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  TCAAGATTTGCTGAGTATCTCTTGATCGAAGGGTTCAAGCCGCTAAAGCGGAAAGATATA  327

Query  241  TCTCTTCGCCTGAAGCGTTGTGGATTTAGGCGTGTCACGCCAACCTTCTGTAAGTTCCTG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  328  TCTCTTCGCCTGAAGCGTTGTGGATTTAGGCGTGTCACGCCAACCTTCTGTAAGTTCCTG  387

Query  301  GATAATCGTTCCCGGATAATGCCTGCCGCAGGGACTAACCCTATCTTCGCGCATACTTCC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  388  GATAATCGTTCCCGGATAATGCCTGCCGCAGGGACTAACCCTATCTTCGCGCATACTTCC  447

Query  361  TTGTTTGTCTGGGAGTTGAATCAGAAGCATCGAATGAAAGCTTCTTTACAGGACCTCTTC  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  448  TTGTTTGTCTGGGAGTTGAATCAGAAGCATCGAATGAAAGCTTCTTTACAGGACCTCTTC  507

Query  421  TATTTCCCTCCATTCTTCTTCCTAGTGACCTAG  453
            |||||||||||||||||||||||||||||||||
Sbjct  508  TATTTCCCTCCATTCTTCTTCCTAGTGACCTAG  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5