BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480278
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT2G10970.1 | Symbols: | Plant invertase/pectin methylesterase... 894 0.0
> AT2G10970.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:4332839-4333579 REVERSE
LENGTH=741
Length=741
Score = 894 bits (484), Expect = 0.0
Identities = 580/627 (93%), Gaps = 4/627 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTGTGTT-TACGCTTCTCATGCATACATATCAATCCATATAGTAACCTTTCTTCT 59
|||| |||| || || ||||||||||||||| ||||||||||||| ||||||| |||||
Sbjct 48 ATGGTTTGT-TTATATGCTTCTCATGCATACCTATCAATCCATATCCTAACCTTCCTTCT 106
Query 60 CCTCTCGCGGTGGCCATCTACCAATGCAAAGTCCAACATTGCTAGCCATTTATCAACGAA 119
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 107 CCTCTCGCGGTGGCCATATACCAATGCAAAATCCAACATTGCTACCCATTTATCAACCAA 166
Query 120 ACCAAAGACATGTCCATATCCATCATTGCTGATATCAAAGGCTTGTAAAGGCACCGCGTC 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 167 ACCAAAGACATGTCCATATCCATCATTACTGATATCAAAGGCTTGTAAAGGCACCGCGTC 226
Query 180 ATTCTCGTCCCTAGAAGAAGCATGTATCGAATCCCTAACGTTAGATCACCGCAC-AAACT 238
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||| |
Sbjct 227 ATTCTCGTCCCTAGAAGAAGAATGTATCAAATCCCTAACGTTAGATCATCGCACGAAA-T 285
Query 239 CTGCATCGACTGCATTGGAGTTGGCTAAGGCCGCCCTTTCTATAGCCATGGAAAAGGCAG 298
| |||||||||| ||| |||||||||||||| || |||||| |||||||||| |||||||
Sbjct 286 CCGCATCGACTGTATTAGAGTTGGCTAAGGCGGCTCTTTCTCTAGCCATGGAGAAGGCAG 345
Query 299 AGCATACGCAGTTTCTCATTGGTTCTCCGAAGAAGCCATGTTTCAAGAGTTGTATGGAGA 358
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 346 AGCACACACAGTTTCTCATTGGTTCTCCTAAGAAGCCATGTTTCAAGAGTTGTATGGAGA 405
Query 359 ACTATAAGGATTCTGTAGTCGAGGGGCTAATGAAGGCAGAGTGGTCGATAGGAAAAGGTG 418
||||||| |||||||| ||||||||||||||||||||| || |||| || || || ||||
Sbjct 406 ACTATAAAGATTCTGTTGTCGAGGGGCTAATGAAGGCACAGCGGTCAATGGGCAATGGTG 465
Query 419 ATGTCGATGAGACCGATGACCAACTTAGTCTTGCACGTGATGCTGCTGACTACTGCAATA 478
|||| |||||||| |||||| | |||||||| |||||||||||||||||||| |||||||
Sbjct 466 ATGTTGATGAGACTGATGACGACCTTAGTCTCGCACGTGATGCTGCTGACTATTGCAATA 525
Query 479 TGATTTTGTCTGTTGATCCAGATGATACAAGATCCCTAGTTTTTGCGGCCAACATGGATG 538
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 526 TGATTTTGTCTGTTGATCCAGATGATACAAGATCCTTAGTTTTTGCGGCCAACGTGGATG 585
Query 539 TGTATAATCACATTACGTTTGTGATGAGTGTAGCAGACTTGCTGTAGATCAATCTCAAAG 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 586 TGTATAATCACATTACGTTTGTGATGAGTGTAGCAGACTTGTTGTAGATCAATCTCAAAG 645
Query 599 TTCCATTTACATTTACAATATTATTTT 625
|||||||| |||||||||||| |||||
Sbjct 646 TTCCATTTTCATTTACAATATAATTTT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5