BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480280
Length=2383
Score E
Sequences producing significant alignments: (Bits) Value
AT2G11000.1 | Symbols: ATMAK10, MAK10 | MAK10 homologue | chr2:... 3410 0.0
> AT2G11000.1 | Symbols: ATMAK10, MAK10 | MAK10 homologue | chr2:4341123-4347856
REVERSE LENGTH=2480
Length=2480
Score = 3410 bits (1846), Expect = 0.0
Identities = 2178/2333 (93%), Gaps = 43/2333 (2%)
Strand=Plus/Plus
Query 83 TTCTTCTATCCCTTCCGGTG---ATAACTCCGTCTGGGCCGATGTTTCGCCTCTCCTCTC 139
|||||||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 151 TTCTTCTATCCCTTCCGGTGATAATAACTCCGTCTGGGCCGATGTATCACCTCTCCTCTC 210
Query 140 CGCCGCCTGCACTGATCTTCAAGAGGGTGAACTCATTAATGGAGATAATTTCAATCTTTT 199
|||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 211 CGCCGCCTGCTCTGATCTTCAAGAAGGTGAACTCATAAATGGAGATAATTTCAATCTTTT 270
Query 200 TGCTGCAATGTCTGCATTAGAGATAATGGACCCAAAGATGGATTCTGGTATGGTGTCTAC 259
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TGCTGCCATGTCTGCTTTAGAGATAATGGACCCAAAGATGGATTCTGGTATGGTGTCTAC 330
Query 260 CTTTTATTCAATAGATGAAGCCATCGAAAGTGGTTTTGCGCCTGTACCTATAAGTTCTGA 319
|||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 331 GTTTTATTCTATAGATGAAGCCATCGAAAGTGGTTTTGCGCCCGTCCCTATAAGTTCGGA 390
Query 320 TAGTACTGTTAATGTTCAATCCATCATTGACATTATGGATCATCTCCTGGCGTGCGAGGC 379
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 391 TAGTACTGTTAATGTGCAATCCATCATTGACATTATGGACCATCTCCTGGCGTGTGAGGC 450
Query 380 AACGTGGCACATGGGTCACTCGTTGGCCCAAACTGTGTTTTCATGCATCTACGTTCTGAG 439
||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 451 AACATGGCACATGGGTCATTCATTGGCCCAAACTGTGTTTTCATGCATCTATGTTCTGAG 510
Query 440 GCCTGAGAGGACATCTTCACAGGCTCTATTGCATTCTTATTGTAGGGTCATCCGAGCAAC 499
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 511 GCCTGAGAGGACATCTTCACAGGCTCTATTACATTCTTATTGTAGGGTCATCCGAGCAAC 570
Query 500 TTGCAGGGCAGTTGTTTCTGTTGTTTCAGATGCACGTACAAATGAGGAAGAGGATCTGTT 559
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 571 TTGCAGGGCAGTTGTTTCTGTTGTTTCAGATGCGCGTACAAATGAAGAAGAGGATCTTTT 630
Query 560 TACCATGACATACGGTCTTCCTTTTAGTGGAGATGAAGATGCCAAGGGCTTGTTACTTTT 619
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 631 TACGATGACATATGGTCTTCCTTTTAGTGGAGAAGAAGATGCCAAGGGCTTGTTACTCTT 690
Query 620 GAATGCGGTTGAAGAAACAATCTGTCGTCAGCTGCGTGCTTGTAAGGCCACAAGAAGAAG 679
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 691 GAATGCGGTTGAAGAAACTATCTGTCGTCAGCTGCGTGCTTGTAAGGCCACAAGAAGGAG 750
Query 680 AGTGTTAGAAGATGCAGAATTGGAACCTCTACAAACTGATCCCCATCTGGAAGAGAGTTT 739
| |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 751 AATGTTGGAAGATGCAGAATTGGAACCTCTACAAAGTAATCCCCATCTGGAAGAGAGTTT 810
Query 740 TTGCAAAGCTCTGTTATGCCGGATACGTTTCCGTAAGCATTTTCTACACGCTCTTAATTG 799
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 811 TTGCAAATCTCTGTTATGCCGGATACGTTTCCGTAAGCATTTTCTACATGCTCTTAATTG 870
Query 800 TATGAGACGACCACAAGGACGTGGCCTCGAATTGGCAAGGAAACACATA-GCGTACTGCA 858
||||||||||||||||||||||||||||||||||||||||||||| ||| || || ||||
Sbjct 871 TATGAGACGACCACAAGGACGTGGCCTCGAATTGGCAAGGAAACATATAGGC-TATTGCA 929
Query 859 TATCAGAGCTAGATTCTGTTCTAGAGTT-GGAAGAATTTTTAAGATTAAATATTGTCGAA 917
|||||||||||||||||||||| || || | ||||||| |||||||| ||||| ||||
Sbjct 930 TATCAGAGCTAGATTCTGTTCTGGA-TTCAGCAGAATTTCTAAGATTAGATATTTTCGAG 988
Query 918 AATGGCGGAAACGAGATAGAAGAAAGTACAACTGCTTCTGGTCGCTCCCCAATTGGATTT 977
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 989 AATGGCGTAAACGAGATAGAAGAAAGTACAACTGCTTCTGGTCGGTCCCCCATTGGATTT 1048
Query 978 GATCCTACCTTAAACAAAAGATTATCAGCTCCAACGCCGCCACGTGCTATTAAACTTCTT 1037
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1049 GATCCTACTTTAAACAAAAGATTATCAGCTCCAACGCCGCCACGTGCCATTAAACTTCTT 1108
Query 1038 TCTTGGAAAAAGGCTATTGACTATTATGTGAAACTTCTTCACAATTTGGATCAGATTTGT 1097
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1109 TCTTGGAAAAAGGCTATTGACTATTATGTGAAACTTCTTCACAATCTGGATAAGATCTGT 1168
Query 1098 GTATTCTCATTGGAACCAGATTTAGAGGCCGTTTTGCAGTTTGTGACTCGGTTTCAAAAA 1157
| ||| |||||||||||||||||||||||||| ||| ||||||||| || ||||||||||
Sbjct 1169 GCATTTTCATTGGAACCAGATTTAGAGGCCGTCTTGGAGTTTGTGATTCAGTTTCAAAAA 1228
Query 1158 TCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGCTTCTCCTTGTGCAAGATGGGAAA 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGCTTCTCCTTGTGCAAGATGGGAAA 1288
Query 1218 CTTTACGGCCGTGATACCTTTTTGTCTATTTGCGCCAGATCTCTTGCATTAGATGTCTCC 1277
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1289 CTTTACGGCCGTGATACCTTTTTGACAATTTGCGCCAGATCTCTTGCATTAGATGTCTCC 1348
Query 1278 AAGAACCATGGCCTTCATACGAATGAGTACATTCTTCAACTTAATCAGTTGATGGTTAAT 1337
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 AAGAACCATGGCCTCCATACGAATGAGTACATTCTTCAACTTAATCAGTTGATGGTTAAT 1408
Query 1338 CTGCTTAAAATACTCTGTGCTAATACCCCATGGCAGAGGCGTAAGCTTGGGAAAATCTTA 1397
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 CTACTTAAAATACTATGCGCTAATACCCCATGGCAGAGGCGTAAGCTTGGGAAAATCTTA 1468
Query 1398 AACGACTGGAGCGTATTCCATGTGCAGATGGGGATTACTGTTGGTCAAATGATGCAGCAA 1457
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1469 AATGACTGGAGCGTATTCCATGTGCAGATGGGGATTGCTGTTGGTCAAATGATGCAGCAA 1528
Query 1458 GATACATCACG-TGCTTCGAAAAATGGGGACAAGTCTCTACTCATTTTAAACCATATATA 1516
||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1529 GATACATCACGCAG-TTCGAAAAATGGGGATAAGTCTCTACTCATTTTAAACCATATATA 1587
Query 1517 TGGTGGATTAGATGAGCAAATTAATTGGGTGGCCATTCGCTTTCTCATGCTGGGATTTGA 1576
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1588 TGGTGGATTAGAAGAGCAAATTAATTGGGTGGCAATTCGCTTTCTCATGCTGGGATTTGA 1647
Query 1577 CCTAGACCTCTACTCTCCAAGTGAATATTGCATGGTGTACTGGTACATGTATATTATACT 1636
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1648 CCTAGACCTCTACTCGCCAAGTGAATATTGCATGGTATACTGGTACATGTATATTATACT 1707
Query 1637 ATGGAAGCTTGCTGAAAGAGCACGTTTCAGGGTCCTAATCATTGTTAACACTGAGGAAAG 1696
||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 1708 CTGGAAGCTTGCCGAAAGAGCACGTTTCAGGGTCTTAATCGTTGTGAACACTGAGGAAAG 1767
Query 1697 AAAAGCAAAGAGGAATAAGGAGTATTCTAGGGACATGGCTCGGGAAGATCAGATTAGTCT 1756
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1768 AAAAGCAAAGAGGAATAAGGAGTATTCTAGGGACATGGCTCGGGAAGATCGGATTAGTCT 1827
Query 1757 GTGGGTGTTGTTTCTCAAATGTCAGACTTGCCTTGCACAAGGCCTCACAGTGATGATTGC 1816
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1828 ATGGGTATTGTTTCTCAAATGTCAGACCTGTCTTGCACAAGGCCTCACAGTGATGATTGC 1887
Query 1817 TGCTTTGAGAAATGAAGGGATGTGTTTAAAGAGTCAAGGACCTTTTAATACCGAAAATGA 1876
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1888 AGCTTTGAGAAATGAAGGAATGTCTTTAAAGAGTCAAGGACCTTTTAATACCGAAAATGA 1947
Query 1877 GAAATTTGTTCAGCATTTTGAACTCCTCCAGAAGGCATCGCTTCCCGAATATGACGCATA 1936
||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1948 GAAATTTATACAGCATTTTGAACTCCTTCAGAAGGCATCCCTTCCAGAATATGACGCATA 2007
Query 1937 TGAATCATTCTCAGAATCCACATCTCATGCTCGTCTCGACTTTCTTCCTATGTATGAGTA 1996
|||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2008 TGAATCGTTCTCAAAATCCACATCCCATGCTCGTCTCGACTATCTTCCTATGTATGAGTA 2067
Query 1997 CTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTTGGTTATGCCAATGACCCTGA 2056
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 2068 CTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTCGGTTACGCCAACGATCCTGA 2127
Query 2057 TAAACTGGCTGAAGTCCA-AGGATTAGAGAAAGTCGCGGAACGCAATATTGTTGCTGTGA 2115
||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 TAAGCTGGCTGAAGT-CACGGGATTAGAGAAAGTCGCGGAACGCAATATTGTTGCTGTGA 2186
Query 2116 ACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGAGTTCACCCATCATCCTTATT 2175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 ACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGAGTTCACCCATCATCCTTATT 2246
Query 2176 TCGCCACTGCTGTTGTCCGTAGAGCTTGAAACT-TAT--------A--CA------A--A 2216
|||| ||||||||||| |||||| ||||||||| | | | || | |
Sbjct 2247 TCGCTACTGCTGTTGTTCGTAGATCTTGAAACTCTCTTTTCCGTTATTCATTTGTTACTA 2306
Query 2217 TCCAA-T----TTT-GGGACAAACCCTATTAAGTTTTGGAAACAAGTGTgcttttttagt 2270
| ||| | ||| ||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 2307 TACAAATCCAATTTTGGGACTGACCCTATTTAGTTTTGGAAACAAGTGTGCTTTTTAAGT 2366
Query 2271 ttcctctctcagcttttatcatgctttttcgctccttttttttttttttCCCTAAATTGT 2330
||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 2367 TTCCTCTCTCAGCTTTTATCATGCTTTTT-GCTCCTTTTTTTTTTTTT-----AA-TTGT 2419
Query 2331 TCCTTTTATAATTTTATTGTAAAATTTTGTTGTTCTAAGAAGTTGAATTATTA 2383
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2420 TCCTTTTATAAATTTATTGTAAATTTTTGTTGTTCTAAGAAGTTTAATTATTA 2472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118322684565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5