BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480281
Length=1936
Score E
Sequences producing significant alignments: (Bits) Value
AT2G11520.1 | Symbols: CRCK3 | calmodulin-binding receptor-like... 2789 0.0
> AT2G11520.1 | Symbols: CRCK3 | calmodulin-binding receptor-like
cytoplasmic kinase 3 | chr2:4618581-4621576 FORWARD LENGTH=1968
Length=1968
Score = 2789 bits (1510), Expect = 0.0
Identities = 1825/1972 (93%), Gaps = 41/1972 (2%)
Strand=Plus/Plus
Query 1 AAAGAAACAGAACACGAATTTTCAAAGTTTTCCACACGATGTCTTCCATGAGATCGTTAC 60
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AAAAAAACAGAACACGAATTTTCAAAGTTTTCCACACGATGTCTTCCATAAGATCGTTAC 60
Query 61 CACGTCCCTAACTCTCCTCCTTCAGACAAAA-TAC-TT--TTAGTCTTCTTTC-TTTGGT 115
||||||||||||||| ||||||||||||||| ||| || ||| ||||||||| ||||
Sbjct 61 CACGTCCCTAACTCTTCTCCTTCAGACAAAAGTACTTTAGTTATTCTTCTTTCTTTTGCC 120
Query 116 ATACTTGTCTGAAAACAAAATAAATC-TTTGTTTTCGGTCAAACTGATTCATATACTGTA 174
|||||| |||||||||| |||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 121 ATACTTCTCTGAAAACAGAATAAATCTTTTGTATTCGGTCAAACTGATTCAAATACTGTA 180
Query 175 CAGTCAAGTCAAAGCTACAAGATCGTGTTCCAGGTTTAGAGAAAATCTTCTGAACTC-TA 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CAGTCAAGTCAAAGCTACAAGATCGTGTTCCAGGTTTAGAGAAAATCTTCTGAACTCAAA 240
Query 234 AGATTCTCATAATTGAGTTTATAAATGGTTTATTGAAGTTGAGTATTTTGTTGATATAAA 293
|||||||||||| ||||||||||||||| | |||||||||| |||||||||||||| |||
Sbjct 241 AGATTCTCATAACTGAGTTTATAAATGGATAATTGAAGTTGTGTATTTTGTTGATA-AAA 299
Query 294 -CAAAATTATGGGTGGAGATGATTTCAGCTTCACAAGATTGGTG-TGTACTGCTTTGTTT 351
||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 300 CCAAAACCATGGGTGGAGATGATTTGAGCTTCACAAGATTGGTGAT-TACTGCTTTGTTT 358
Query 352 GGTCTGTTAATGTTATTGCAAATCAAGGAAACTTCTGCGTCAGCATCCTTTGTAAGCTCG 411
|||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 359 GGTCTGTTAATGTTGTTACAAATCAAGGAAACTTCTGCATCAACATCCTTTGTAAGCTCG 418
Query 412 AGCGTTTGTCGGTCTGATCACTTGACCTACACAAAGCCTTATCAACAAGGGAGTTTGTTC 471
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGTGTTTGTAAGTCTGATCACTTGACCTACACAAAGCCTTATCAACAAGGGAGTTTGTTC 478
Query 472 ACTATTAACGGGAATCCGGTGGAGAAAGTCCGGTTTTGCGAAGCCTTACGGTTTCACAAA 531
|| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 479 ACAATTAACGGTAATCCGGTGGAGAAACTCCGGTTTTGCGAAGCTTTACGGTTTCACAAA 538
Query 532 GCCAATGGTTGTATCTTTGGGGATTCTTTCT-GTGATGACTTCTGCACAGTTCACTATCT 590
||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||| |||
Sbjct 539 GCCAATGGTTGTATCTTTGAGGATTCTTT-TAGTGATGACTTCTGCACAATTCACTCTCT 597
Query 591 ACTAGGGAGAAGGTTTTTGGAAGAGAAATCTGTAAAAGATTCCAAAAATAGTAAGCCTAA 650
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 598 ACTAGGGAGAAGGTTTTTGGAAGAAAAAACTGTAAAAGATTCCAAAAATAGTAAGCCTAA 657
Query 651 ATCTGAATATAGCCATGTTAAAGTCAGCATGGCAGGAAGCGGGTTTCTTCTCTTGTGTTG 710
| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 658 AACTGAATATAGCCATGTTAAAGTTAGCATAGCAGGAAGTGGGTTTCTTCTCTTGTGTTG 717
Query 711 CGCGCTTTGTTGTCCTTGCTTCCATAAGGAGAGGAAAGCAAATAGTCATGAAGTTCTACC 770
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 718 CGCTCTTTGTTGTCCTTGCTTTCATAAAGAGAGGAAAGCAAATAGTCATGAAGTTCTACC 777
Query 771 CAAAGAATCTAACTCAGTGCACCAAGTTTCCTCTTTTGAAATGAGCCCTTCTTCTGAGAA 830
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 TAAAGAATCTAACTCAGTGCACCAAGTTTCTTCTTTTGAAATGAGCCCTTCTTCTGAGAA 837
Query 831 GATTCCGCCTAGTCCATTCCGGGCACCACCAAGTCCATCCCGTGTACCGCAAAGTCCATC 890
|||||| | ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 838 GATTCCACAAAGTCCATTCCGAGCACCACCAAGTCCATCCCGCGTACCGCAGAGTCCATC 897
Query 891 TAGATATGCTATGTCCCCAAGGCCTAGTAGACTGGGACCCTTGAATCTGTCCATGAGTCA 950
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 898 TAGATATGCTATGTCCCCAAGGCCTAGTAGACTGGGACCTTTGAATCTGACCATGAGTCA 957
Query 951 AATTAATGCAGCAACCAGCAATTTCT-CAGACAGTCATCAAATCGGTGAAGGAGGCTTTG 1009
|||||| ||||||| | ||||| | |||||||||| ||||| ||||||||||||||||
Sbjct 958 GATTAATACAGCAACTGGTAATTT-TGCAGACAGTCACCAAATTGGTGAAGGAGGCTTTG 1016
Query 1010 GGGTAGTCTATAAAGGCTTTCTAGATGATGGCCAGGTGGTTGCCATAAAACGAGCAAAAA 1069
| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1017 GTGTAGTCTTTAAAGGCGTTCTAGATGATGGCCAGGTTGTTGCCATAAAACGAGCCAAAA 1076
Query 1070 AGGAACACTTTGAGAATCTGCGAACGGAATTCAAAAGTGAAGTTGACCTTTTGTCTAAAA 1129
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1077 AGGAACACTTTGAGAATCTGCGAACGGAGTTTAAAAGTGAAGTTGACCTTTTGTCTAAAA 1136
Query 1130 TTGGCCACCGGAATCTAGTGAAGCTTCTTGGTTATGTTGATAAAGGAGACGAGCGACTTA 1189
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1137 TTGGCCACCGGAACCTAGTGAAGCTTCTTGGTTATGTTGACAAAGGAGACGAGCGACTTA 1196
Query 1190 TCATAACCGAGTATGTCAGAAATGGTACACTCCGCGATCACTTGGATGGTGCTCGTGGAA 1249
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1197 TCATAACTGAGTATGTCAGAAATGGTACACTCCGCGATCACTTGGACGGTGCTCGTGGAA 1256
Query 1250 CTAAACTTAATTTCAATCAGAGGTTGGAGATTGTGATTGATGTCTGCCATGGATTGACCT 1309
||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||
Sbjct 1257 CTAAACTTAATTTCAATCAAAGGTTGGAGATTGTTATTGATGTCTGCCATGGCTTAACCT 1316
Query 1310 ATCTCCATTCTTATGCAGAAAGACAGATAATCCACCGTGACATAAAATCCTCAAACATTC 1369
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1317 ATCTCCATTCTTATGCAGAAAGACAGATAATTCACCGTGACATAAAATCGTCGAACATTC 1376
Query 1370 TACTCACGGATAGCATGAGAGCCAAAGTGGCAGACTTCGGGTTTGCAAGAGGCGGTCCTA 1429
||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1377 TACTCACAGATAGCATGAGAGCCAAAGTAGCAGACTTCGGCTTTGCGAGAGGCGGTCCTA 1436
Query 1430 CTGACTCGAACCAGACCCACATTTTAACTCAAGTGAAAGGAACCGTTGGTTATCTCGATC 1489
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTGACTCGAACCAGACTCACATTTTAACTCAAGTGAAAGGAACCGTTGGTTATCTCGATC 1496
Query 1490 CTGAGTACATGAGGACTTATCAGCTCACTGCCAAAAGCGATGTTTACTCATTCGGGATTT 1549
|||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1497 CTGAGTACATGAAAACTTATCATCTCACTGCTAAAAGCGATGTTTACTCGTTCGGGATTT 1556
Query 1550 TGCTTGTGGAGATACTCACAGGCCGTCGTCCAGTGGAGGCCAAGCGACCTCATGATGAGA 1609
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1557 TGCTTGTGGAGATACTCACAGGCCGTCGTCCAGTGGAGGCCAAGCGACTTCCTGATGAGA 1616
Query 1610 GGATTACAGTTCGATGGGCATTCGACAAGTACAATGAAGGGAGAGTTTTTGAACTAGTGG 1669
||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1617 GGATTACGGTCCGATGGGCATTCGACAAGTACAATGAAGGGCGAGTTTTTGAACTAGTGG 1676
Query 1670 ATCCAAACGCGAGGGAACGAGTAGATGAGAAGATACTAAGAAAGATGTTTAGTTTGGCAT 1729
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1677 ATCCTAACGCGAGGGAACGAGTAGATGAGAAGATACTAAGGAAGATGTTTAGTTTGGCAT 1736
Query 1730 TTCAATGTGCTGCTCCTACCAAAAAAGAGCGGCCGGACATGGAAGCTGTTGGGAAGCAGC 1789
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1737 TTCAATGTGCTGCTCCTACTAAAAAAGAGCGGCCTGACATGGAAGCTGTTGGGAAGCAGC 1796
Query 1790 TTTGGGCTATAAGATCAAGTTATCTCAGGCGGTCAATGGAATAAAACAAAATGCT-ATA- 1847
|||||||||||||||||||||||||||||||||||||||||||| |||| || | | |
Sbjct 1797 TTTGGGCTATAAGATCAAGTTATCTCAGGCGGTCAATGGAATAAGACAAG-TGTTCACAC 1855
Query 1848 GT--CT-CT-C-----TG-T-T-GT-TA---GAT---A-ATA-T-T-ACCTCTTTTACAT 1884
|| | | | || | | || | | | | ||| | | |||||||||||||
Sbjct 1856 GTTACAACCACCAAAATGCTATAGTCTCTCTGTTGTTAGATAATATCACCTCTTTTACAT 1915
Query 1885 TTTGCTATGAAACCACTTCTTCGTCAGATTTGAAATGAGATGTCTTATTCAT 1936
|||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1916 TTTGCTATCCAACCACTTCTTCTTCAGATTTGAAATGAGATGTCTTATTCAT 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95883040950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5