BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480295
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12646.1 | Symbols: | PLATZ transcription factor family pro... 1683 0.0
> AT2G12646.1 | Symbols: | PLATZ transcription factor family protein
| chr2:5167042-5169185 REVERSE LENGTH=1071
Length=1071
Score = 1683 bits (911), Expect = 0.0
Identities = 1015/1066 (95%), Gaps = 3/1066 (0%)
Strand=Plus/Plus
Query 1 tttttttctctctctctctctctcCCTTGTGATCCTCCATAAATCCTATCATC-AGTACT 59
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 6 TTTTTTTTTCTCTCTTTCTCTCTCCCTTGTGATCCTCCATAAATCCTATCATCAAGTACT 65
Query 60 CCCCTAAAAAATCCCTTTTCTCTTCCGAATATTACTCTTTGTAGTGAGTAGTGGCCAAAA 119
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 66 CCCCTAAAGAATCCTTTTTCTCTTCCTAATATTACTCTTTGTAGTGAGTAGTGGCCAAAA 125
Query 120 ATTTCCATCTCCCAAAGCTTACTTTGAGTTGTGTCCTCATGGGAATTCAGAAACCGGCAT 179
|||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 126 GTTTCCATCTCCCAAAGCTGACTTTCAGTTGAGTCCTCATGGGAATTCAGAAACCGGCAT 185
Query 180 GGTTGGATGCGCTATACGCAGAGAAGTTCTTCGTAGGATGTCCTTACCATGAGACAGCAA 239
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
Sbjct 186 GGTTGGATGCGCTATACGCAGAGAAGTTCTTCGTGGGATGTCCATACCATGAGACGGCGA 245
Query 240 AGAAGAACGAGAGGAACGTGTGTTGTCTTGATTGTTGCACCAGTCTCTGTCCTCACTGTG 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 246 AGAAGAACGAGAGGAACGTGTGTTGTCTTGATTGTTGCACCAGTCTCTGCCCTCACTGTG 305
Query 300 TACCCTCTCATAGATTTCATAGACTCCTTCAAGTTCGCCGTTATGTGTATCACGATGTTG 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 306 TACCCTCTCATAGATTCCATAGACTCCTTCAAGTTCGCCGTTATGTGTATCACGACGTTG 365
Query 360 TTCGGCTTGAAGATCTTCAAAAACTAATCGACTGCTCTAACGTTCAAGCTTATACTATAA 419
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 366 TTCGGCTTGAAGATCTTCAGAAACTCATCGACTGCTCTAACGTTCAAGCTTATACAATAA 425
Query 420 ATAGTGCAAAAGTGGTGTTCATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 ATAGTGCAAAAGTGGTGTTCATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTG 485
Query 480 GCAACTATTGCACATCATGTGACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGG 539
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GCAACTATTGCACTTCTTGTGACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGG 545
Query 540 GTTGTAAGGTGGACTTTGTGATGAAACGTTATAGGGACTTAACCCCATTCCTAAAGCCAT 599
||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 546 GTTGTAAGGTGGACTTTGTGATGAAACGTTACAGGGACATAACCCCATTCCTCAAGCCAT 605
Query 600 GTCACACTCTAACCCTAGGTCCTGACTACATCATCCCACAAGACTTACTGACGGATGATG 659
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 606 GCCACACTCTAACCCTAGGTCCTGACTACATCATCCCACAAGACTTACTGACAGATGATG 665
Query 660 ATGTGGCGGTCTACGAGACTCCTAGATCAACTGTGGTAGACGGGGATGAGTCCATGAGCT 719
| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 666 AAGTGGCGGCCTACGAGACTCCTCGATCAACTGTGGTAGACGGCGATGAGTCCATGAGCT 725
Query 720 GGTCCTCCGCTTCCTCGGATAACAACAATACGGGTGCGGCTGCTGCTTATGCCGCGACCA 779
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 726 GGTCCTCAGCTTCCTCGGATAACAACAATGCGGGTGCGGCGGCTGCTTATGCCGCAACCA 785
Query 780 CAACCCATGTCGTGAGGAAAAAGCGGACCGGTTTTTGCCTTTGCGCCAAATCGGCTAATA 839
| |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct 786 CCACCCATGTCGTGAGGAAAAAAAGGACTGGTTTTTGCCTTTGCGCTAAATCGGCTAATA 845
Query 840 GTTATAAAGAAGTTTCGGAGGATCCTGACGATATTTCTACTTGCATTAATCGGCGAAAAG 899
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 846 GTTATAAAGAAGTTTCGGAGGATCCTGACGATATTTCTGCTTGCATCAATCGGCGAAAAG 905
Query 900 GCGTTCCTCAACGATCTCCTCTCTGTTAACGTACttttttattttttgtttttgtttttt 959
||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| |
Sbjct 906 GCGTTCCTCAACGATCTCCTCTCTGTTAACGTACTCTTTTCTTCTTTGTTTTTGTTTTCT 965
Query 960 aatcttcttaattagttt-ttttGCACCATATAGTCTTATATGTTACATGTATGGATTCT 1018
||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 966 AATCTTCTTTATTAGTTTCTTTT-CACCATATAGTCTTATATGTTACATGTATGGATTCT 1024
Query 1019 TGTCGTGCGGTCTCTCTAATAAAGTTTATAATCTGttttttttttt 1064
||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1025 TGTCGTGCGGTCTCTCTAATAAAGTTTATAATCAGTTTTTTATTTT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52108165710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5