BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480298
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13100.1 | Symbols: | Major facilitator superfamily protein... 2025 0.0
> AT2G13100.1 | Symbols: | Major facilitator superfamily protein
| chr2:5390206-5391929 FORWARD LENGTH=1647
Length=1647
Score = 2025 bits (1096), Expect = 0.0
Identities = 1233/1299 (95%), Gaps = 10/1299 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAGTGGGATTCTTACTGTTGTGTTTGGTTTAGGGTATTGGATGAATGTTCATTTA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 355 ATGGGTAGTGGGATTCTTACTCTTGTGTTTGGTTTAGGGTATTGGATGAATGTTCATACA 414
Query 61 CTTGGGTTTTATATGAGTGTTCAGATTGTGTGTGGTTTGTTTCAATCTATTGGATGGCCT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 415 CTTGGGTTTTATATGAGTGTTCAGATTGTTTGTGGTTTGTTTCAATCTATTGGATGGCCT 474
Query 121 TGTGTTGTTTCTGTTGTTGGTAATTGGTGTGGGAAAGAGAAACGTGGGTTGATTATGGGT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 TGTGTTGTTTCTGTTGTTGGTAATTGGTGTGGGAAAGAGAAACGTGGTTTGATTATGGGT 534
Query 181 GTGTGGAATTCTCATACTTCTGTTGGGAATATTCTTGGTTCGGTTATTGCGTCTTCGGTT 240
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 535 TTGTGGAACTCTCATACTTCTGTTGGGAATATTCTCGGTTCGGTTATTGCGTCTTCGGTT 594
Query 241 CTTGATTTCGGATGGGGATGGTCTTTTGTTTTGCCTGGTGGGTTGGTGATTGTTTCTGGA 300
||||||||||| ||||| |||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 595 CTTGATTTCGGTTGGGGTTGGTCTTTTGTTTTGCCTGGTGTGTTGGTGCTTGTGTCTGGA 654
Query 301 GTGGTTGTGTTTATGTTTCTTGTTGTTAGTCCTCATGATTTGGGGTTTGAAGAACCGGGT 360
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 655 GTGGTTGTGTTTATGTTTCTTGTTGTTAGTCCTAATGATTTGGGGTTTGAAGAATTGGGT 714
Query 361 AAAGAGATTGAGATCGAGATGAGTTTAGGTGAGAATGTAGAGGAAAGTTTGAGGAAACGG 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAAGAGATTGAGATTGAGATGAGTTTAGGTGAGAATGTAGAGGAAAGTTTGAGGAAACAT 774
Query 421 GAAGCTGAGGATGCAGTGCTTCTTGAAAACGTCGATGAATTGGATGATTCCTTGTTTGCT 480
|||||||||| || ||||| |||||||| || | | |||||||| | |||||||
Sbjct 775 GAAGCTGAGGGCGCGGTGCTACTTGAAAA---CG-T--A---GATGATTCGTCGTTTGCT 825
Query 481 ATCGGGTTTCTCGAGGCTTGGAGATTGCCTGGTGTTGCGCCTTACGCTTTCTGTTTGTTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 ATCGGGTTTCTCGAGGCTTGGAGATTGCCTGGTGTTGCGCCTTACGCTTTCTGTTTGTTT 885
Query 541 TTCTCGAAACTCGTCGCTTACACGTTCTTGTATTGGTTACCATACTACTTAAGGCACACA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TTCTCGAAACTCGTCGCTTACACGTTCTTGTATTGGTTACCATACTACTTAAGGCACACA 945
Query 601 GCTGTTGCGGGTGTGAATCTCTCCCACAAAACCGCTGGGATTCTCTCGACAGTCTTTGAC 660
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 946 GCTGTTGCGGGTGTGAATCTCTCCCATAAAACCGCTGGGATTCTCTCGACGGTCTTTGAC 1005
Query 661 ATAGGAGGAGTGCTTGGTGGAATATCAGCAGGGTTCATTTCCGATAAAATTAAAGCGCGT 720
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GTTGGAGGAGTTCTTGGTGGAATATCAGCAGGGTTCATTTCCGATAAAATTAAAGCGCGT 1065
Query 721 GCACTCACATCAATCACATTCTTGGCACTCTCCATTCCTGCTCTAATTATGTACAGAATA 780
|| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct 1066 GCGCTCACGTCAATCACATTCTTGGCACTCTCTATTCCTGCTTTAATTATGTACAGAGTC 1125
Query 781 TATGGGAGTGTGTCAATGTTCATCAACATCGTCTTGATGTTTATATCCGGGTTATTAGTA 840
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TATGGAAGTGTGTCCATGTTCATCAACATCGTCTTGATGTTTATATCCGGGTTATTAGTA 1185
Query 841 AACGGTCCTTATGCACTAATAACCACAGCAGTTGCAGCTGATCTCGGAACACAAGACTCC 900
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1186 AACGGTCCTTATGCACTAATAACCACAGCTGTTGCAGCTGATCTCGGAACACAAGACTCT 1245
Query 901 ATTAAAGGAAATGGTCGGGCATTGGCGACAGTAACTGCTATTATAGATGGTACTGGTTCG 960
|| ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1246 ATAAAAGGGAATGGTCGAGCTTTGGCGACAGTAACTGCTATTATAGACGGTACTGGTTCG 1305
Query 961 GTTGGTGCAGCTTTGGGACCGTTACTCGCTGGTTACATATCGAGCAGAGGGTGGAACAGT 1020
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1306 GTTGGCGCAGCTTTGGGTCCGTTGCTTGCTGGTTACATATCGAGCAGAGGGTGGAACAGT 1365
Query 1021 GtttttttCATGCTTATTGTTTCAATATTCTTTGCGGGTTTGTTCTTGGTTCGGCTTGCA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GTTTTTTTCATGCTTATTGTTTCAATATTCTTTGCGGGTTTGTTCTTGGTTCGGCTTGCA 1425
Query 1081 AAGGCTGAGATCAATATGATGAGGTCCGGAGAATTGATAGCGTCGAGTGATCCTCAAAGC 1140
||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1426 AAGTCTGAGATCAATACGATGAGGTCCGGAGAATTGATAGCGTCGAGTGTTCCTTAAAGC 1485
Query 1141 TGATGATTTTGATCCCAGCAG-ATTGTATACAAAGGTAGTATCAGGTACATAGATTCAAA 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TGATGATTTTGATCCCAGCAGGATTGTATACAAAGGTAGTATCAGGTACATAGATTCAAA 1545
Query 1200 CAATACAATACAAATTGAGACACCGCCTGATTTGTTTTCTACCATTTTAGTTTAGATGAA 1259
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1546 CAATACAATACAAATTGAGACACCACCTGATTTGTTTACTACCATTTTAGTTTAGATGAA 1605
Query 1260 GCAAAGTCTACTATTTTTGATATTTCACGACATTGAAGT 1298
| |||||||||||||||||||||||||||||||||||||
Sbjct 1606 GTAAAGTCTACTATTTTTGATATTTCACGACATTGAAGT 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63855093240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5