BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480301
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13290.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 1899 0.0
> AT2G13290.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase
family protein | chr2:5511562-5513265 FORWARD LENGTH=1492
Length=1492
Score = 1899 bits (1028), Expect = 0.0
Identities = 1216/1304 (93%), Gaps = 23/1304 (2%)
Strand=Plus/Plus
Query 138 CTTCTTGGGTTCTCATTTCTTTATCTTATACACTTGAAATATCCAAACAGGGGAAAAAGA 197
|||| || ||||||||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 193 CTTCGTGTGTTCTCATTTCTTAATCTTATACACTTGAAATCTCCAAAAAGGGGAAAAAGA 252
Query 198 AAATGAG-T--TG--G--T--G------A-AGATGACGATTCGATCGTTGCGGAAGCCAC 241
||||||| | || | | | | |||||||||||||||||||||| || ||||
Sbjct 253 AAATGAGTTGGTGAAGTTTGAGAACCATAGAGATGACGATTCGATCGTTGCGTAAACCAC 312
Query 242 CGCCTGTTAAACTTGTGTTTCCAT-CTCTGATTATACTGTTCTTGACATGTTTGTTTTGT 300
|||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||
Sbjct 313 CGCCGGTTAAACTTGTGTTTCC-TACTCTGATTATACTCTTCTTGACATGTTTGTTATGT 371
Query 301 ATTC-TGACGAATTTGCAAACCATTTCGTATCTTTTCCGTCCGCTTTGGGATAAACCGCC 359
| || | || ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 372 A-TCTTAACAAATTTCCAAACCATATCGTATCTTTTCCGTCCGCTTTGGGATAAACCGCC 430
Query 360 ACCGCCTTTTAAACGGATACCGCATTACTATGCGGAGAATGTTTCCATGGGACATCTTTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ACCGCCTTTTAAACGGATACCGCATTACTATGCGGAGAATGTTTCCATGGGACATCTTTG 490
Query 420 TGAACTTCATGGGTGGACACCACGGTCAGTACCGAGGCAAGTCTTTGATGCCATCATTTT 479
||| ||||| || |||||||| |||| || |||||||| ||| |||||||||||||||||
Sbjct 491 TGAGCTTCACGGCTGGACACCGCGGTTAGAACCGAGGCGAGTGTTTGATGCCATCATTTT 550
Query 480 CAGTAATGAGCTTGATCTTCTTGAACTCAGATGGCGGGAGTTGGAGCCTTATGTTTCGAA 539
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 551 CAGTAATGAGCTTGATCTTCTTGAAGTCAGATGGCGGGAATTGGAGCCTTATGTGTCGAA 610
Query 540 GTTTGTGATCTTGGAATCAAACACTACGTTTACTGGGATCCCGAAGCCGCTTTTCTTTGA 599
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 611 GTTTGTGATATTGGAGTCAAACACTACGTTTACCGGGATCCCGAAGCCGCTTTTCTTCGA 670
Query 600 TTCTAATAAGGAGAGATTCGCGTTTGCTGAGGGTAAGATAGTACATGGAGTGTTTCCTGG 659
||| |||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 671 TTCCAATAAGGAGAGATTTGCGTTTGCGGAGGGGAAGATTGTACATGGAGTGTTTCCTGG 730
Query 660 GAAGAAACGCTCTAAGGGGCAGCCGTATGAGGACCCGTTTTTGCTTGAGGGGCAACAGCG 719
||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 731 GAAGAAACGGTCTACGGGGCAGCCGTATGAGGATCCGTTTTTGCTTGAGGGGCAACAGCG 790
Query 720 AGTTGCGATGAACTGGTTGCTTAGAGAAGCTGGAATTTCGGATGGAGATGCGGTGATAAT 779
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 791 AGTTGCGATGAACTGGTTGCTTAGAGAAGCTGGTGTATCGGATGGAGATGCGGTGATAAT 850
Query 780 GTCAGATGCAGACGAGATTCCGAGCCCTCATACTGTGAAATTTCTACAGTGGTGCGATGG 839
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 851 GTCAGATGCAGACGAGATTCCGAGTCCTCATACTGTGAAGTTTCTACAGTGGTGTGATGG 910
Query 840 GATACCAAATGTAATGCATCTT-GAGATGAGGGAATACATGTACTCCTTTGAGTTCCCGG 898
||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 911 GATACCAGATGTAATGCAT-TTGGAGATGAGGGAATACATGTACTCCTTTGAGTTTCCGG 969
Query 899 TTGATTACAGCAGCTGGAGAGCCTCTGTTCATATATACAGCAGGAAGTGGACTCAATACC 958
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 970 TTGATTACAGTAGCTGGAGAGCCTCTGTTCATATATATAGTAGGAAGTGGACTCAATACC 1029
Query 959 GGCACTCCCGACAAACAGACTTGATATTATCCGACGCAGGGTGGCATTGCAGCTTCTGTT 1018
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GGCACTCACGACAAACGGACTTGATATTATCCGACGCAGGGTGGCATTGCAGCTTCTGTT 1089
Query 1019 TCAGAAGACTCAACGAATTCGTTTTCAAGATGAAAGGTTATAGTCATGCAGACAGAGTCA 1078
||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1090 TCAGACGACTCAACGAGTTTGTTTTCAAGATGAAAGGTTATAGTCATGCAGATAGAGTCA 1149
Query 1079 AACGCAAGGAGTTTTTGGATTATCAGAGGATACAAAAACATATATGTAAAGGTTATGATC 1138
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1150 AACGCAAGGAGTTTTTGGATTATCAGAGGATACAAAAACATATTTGCAAAGGTTATGATC 1209
Query 1139 TTTTTGACATGCTTCCCGAAAGATACAGCTTCAAAGAGTTGATTAGCAAAATCGGACCCA 1198
| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1210 TCTTTGACATGCTTCCTGAAAAATACAGCTTCCAAGAGTTGATTAGCAAAATCGGACCCA 1269
Query 1199 TCCCGCCTTCTGCATCTGCGGTACATCTACCTGCCTTTTTGATTCAGAACGCTGCTCGCT 1258
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1270 TCCCGCCTTCTGCGTCTGCGGTACATCTACCAGCCTTTTTGATTCAGAACGCTGCTCGCT 1329
Query 1259 TTCGGTTTCTCCTCCCGGGAGGTTGTCTCCGAGAACCCTAGCTGAAGATTAAGTACAAAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TTCGGTTTCTCCTCCCGGGAGGTTGTCTCCGAGAACCCTAGCTGAAGATTAAGTACAAAA 1389
Query 1319 TAGAGAAGCAATAGTTTCTTGTTAAAAAGGTTTTTTGGCATCACACCAACTTAACCTGAA 1378
|||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 1390 TAGAGAAGCAATAGTTTCTTGTTACAAAGGTTTTT-GGCGTCACACCAACTTAACCTGAA 1448
Query 1379 ACAACAGATAAATAAAGAAATAGATCTTATCACATGTTCTGTTT 1422
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1449 ACAACAGATAAATAAAGAAATAGATCTTATAACATGTTCTGTTT 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5