BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480303
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13350.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 2204 0.0
> AT2G13350.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr2:5536392-5537881 REVERSE LENGTH=1490
Length=1490
Score = 2204 bits (1193), Expect = 0.0
Identities = 1306/1359 (96%), Gaps = 13/1359 (1%)
Strand=Plus/Plus
Query 1 TTTTTCAGATTTAGTTTTGTCAAGaaaa-a-aaaaTGTCTTTTCTTGCGCCTTGTCAAAT 58
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 118 TTTTTCAGATTTAGTTTTGTCAAGAAAACACAAAATGTCTTTTCTTGCGCCTTGTCAAAT 177
Query 59 CTTGGAGCTGAATATTATTTCGGCCCAAGAATTGGCGCCCGTGGCACGGTGTATGAAGAC 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTTGGAGCTGAATATTATTTCGGCCCAAGAATTGGCGCCCGTGGCACGGTGTATGAAGAC 237
Query 119 ATATGCAATCGCTTGGATTGATCCAGAGCGTAAATTGACGACTCGGGTCGACAATACGGG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATATGCAATCGCTTGGATTGATCCAGAGCGTAAATTGACGACTCGGGTCGACAATACGGG 297
Query 179 TGGAACAAGCCCTACATGGAACGACAAGTTTGTGTTTCGTCTAGATGAGGAAGCACTTTA 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 298 CGGAACAAGCCCTACATGGAACGACAAGTTTGTGTTTCGTCTAGATGAGGAAGCACTCTA 357
Query 239 CGATGCCACATCAATAGTTGTTATAGAGATCTATGCATTGCATTGGTTCAAAGACATTCA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGATGCCACATCAATAGTTGTTATAGAGATCTATGCATTGCATTGGTTCAAAGACATTCA 417
Query 299 TGTTGGAACGGTACAAACCTTGATAAGTGACCTTGTCAGCCCTTCTTCGGCTATGAGATT 358
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 418 TGTTGGAACGGTACAAGCCTTAATAAGTGACCTTGTAAGCCCTTCTTCGGCTATGAGATT 477
Query 359 TGTTACCCTAGAGGTTCTTCGTGCCTCGGGCCGCCCACACGGCCTCCTAAACATTGCGGT 418
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 CGTTACCCTAGAGGTTCTTCGTGCCTCGGGCCGCCCCCACGGCCTCCTAAACATTGCGGT 537
Query 419 GGGGCTTATCGATAACTCAGGCCAAAGCATGCCTCTTTTGTTTGAAGAAGATTTGTTGTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGGGCTTATCGATAACTCAGGCCAAAGCATGCCTCTTTTGTTTGAAGAAGATTTGTTGTT 597
Query 479 TCACAAGAAAAACATATCTTCAAAACCTGTAGGGTTTCGACGGTCAAAAAGTGATACAAG 538
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 598 TCACAAGAAAAACATATCTTCAAAACCCGTAGGGCTTCGACGGTCAAAAAGTGATACAAG 657
Query 539 CTCAATGGTGGATTCACCAAGGAAGGTTACACAATCCCGTGTGAGTTCTACTACAAACTC 598
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 CTCAATGGTGGATTCACCAAGGAAGGTGACACAATCCCGTGTGAGTTCTACTACAAACTC 717
Query 599 AGGTTTTGAGAAAGATGAGTTTTCATCTGACTCTCAAATGGTTGTGTATGAGCCTCAAAG 658
||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 718 AGGATTTGATAAAGATGAGTTTTCTTCTGACTCTCAAATGGTTGTGTATGAGCCCCAAAG 777
Query 659 AAAAACCCCGAATACATTGTTGAGGCaaaaaaaGCAACAAATCGTGTATGGGACACCGAT 718
|||||| ||||||||| || ||||||| |||||||||| |||||||||||||||||||
Sbjct 778 AAAAACGCCGAATACAATG---AGGCAAACAAAGCAACAACTCGTGTATGGGACACCGAT 834
Query 719 GAGGCCAAGGAACACGACAGCATATACCCCCAAAAGGAACA-ATATCGAATATGGAACAC 777
|||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 835 GAGGCCAAGGAAAACGACAGCATATACCCCCAAAAGGAACACA-ATCGAATATGGAACAC 893
Query 778 CAATGAGGTCAAGACCAATCGTTATTACAGAATCTGATTTAGGTCCTTCAGCCTCAGTGG 837
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 894 CAATGAGGTCAAGACCAATCGTTATTACAGAATCTGACTTAGGTCCTTCAGCCTCAGTAG 953
Query 838 TTGCTGCCCAAATAGCAAAAGAGAAGGCACTCACAGGGAAAGATGCTGAGAGTACTGTGA 897
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 954 TTGCTGCCCAAATAGCAAAAGAGAAAGCACTTACAGGGAAAGATGCGGAGAGTACTGTGA 1013
Query 898 TAAGTGTTGGTGAACGAAGCGTCGAGGGTCTTCGTTCTAAGCTAGAAAGGTGGCAAGCCA 957
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1014 TAAGTGTTGGTGAACGAAGTGTCGAGGGTCTTCGTTCTAAGTTAGAAAGATGGCAAGCCA 1073
Query 958 ATCTACCAGTGGTTTTAGACGTGGGTTCAAGTTATCAACCAAGTTCTGACTACAAAACAA 1017
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1074 ATTTACCAGTGGTTTTAGACGTGGGGTCAAGTTATCAACCAAGTTCTGACTACAAAACAA 1133
Query 1018 ACTCTAACTTTAACCCTAAATCAAGTTACAAGCCCAATGAAATCGTGCCAAGAAATCCTC 1077
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1134 ACTCTAACTTTAACCCTAAATCAAGTTACAAGCCTAACGAAATCGTCCCAAGAAATCCTC 1193
Query 1078 AGATGATTGGAGCTCCCATCCAAAAGCAAAGTGGGAGGAACAAGAAAGGAGGAGATAATG 1137
| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
Sbjct 1194 AAATGATTGGAGCTCCCATCCAAAAGCCAAGTGGGAGGAACAAGAAAAGTGGAGATAACG 1253
Query 1138 GATTGTTTTCATGTTTTGGTAACATTTGTGGCATTGAGTGTTCTATTGTTTGTGGTGGCT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GATTGTTTTCATGTTTTGGTAACATTTGTGGCATTGAGTGTTCTATTGTTTGTGGTGGCT 1313
Query 1198 CTAGTGGACaaaaagcagccaagaagaagaagaaaaagaagtgaaaaaCTT-CAAACACT 1256
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
Sbjct 1314 CTAGTGGACAAAAAGCAGCCAAGAAGAAGAAGAAAAAGAAGTGATAAA-TAACAAACA-T 1371
Query 1257 -ATTCCTTCAATTCTAAATGATTCATTTCTCATTATGTTTCTATTTTTCAAGCTTGTCGA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GATTCCTTCAATTCTAAATGATTCATTTCTCATTATGTTTCTATTTTTCAAGCTTGTCGA 1431
Query 1316 TTTTGCTACTCAATAATC-AAATTTATAATAGTAAGACA 1353
|||||||||||||||||| ||||||||| ||||||||||
Sbjct 1432 TTTTGCTACTCAATAATCCAAATTTATA-TAGTAAGACA 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5