BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480305
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13360.1 | Symbols: AGT, AGT1, SGAT | alanine:glyoxylate ami... 2366 0.0
> AT2G13360.1 | Symbols: AGT, AGT1, SGAT | alanine:glyoxylate aminotransferase
| chr2:5539240-5541358 REVERSE LENGTH=1540
Length=1540
Score = 2366 bits (1281), Expect = 0.0
Identities = 1449/1529 (95%), Gaps = 16/1529 (1%)
Strand=Plus/Plus
Query 1 CATGTAATTGaaaataaataaat-taat--taaaaa-aaaaa-aa-aaGATATAGTAAAG 54
||||||||| ||||||||||||| ||| ||||| ||||| || |||||||| |||||
Sbjct 6 CATGTAATTTAAAATAAATAAATAAAATAAAAAAAAGAAAAAGAAGAAGATATATTAAAG 65
Query 55 AGGTTTGTGAAGACGAAGGAGTCCAAAA-ATCCCTCAGGAGCTTCCGCCTTATTCAGAG- 112
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 66 AGGTTTGTGAAGACGAAGGAGTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGT 125
Query 113 G-A-AGGAGGAGCAAAAAGAACA-AGG-AAAAATGGACTATATGTATGGACCAGGGAGAC 168
| | ||||||| | ||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 126 GTAGAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGAC 185
Query 169 ACCATCTGTTTGTGCCTGGACCAGTGAACATACCAGAACCGGTAATCCGGGCGATGAACC 228
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 186 ACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTAATCCGGGCGATGAACC 245
Query 229 GGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCTCTTACAAAAACATTGTTGGAGG 288
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 246 GGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCGCTTACGAAAACATTGTTGGAGG 305
Query 289 ATGTGAAGAAGATATTCAAGACCACATCTGGGACACCGTTTCTGTTTCCCACAACAGGGA 348
|||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||
Sbjct 306 ATGTTAAGAAGATATTCAAGACCACATCAGGGACACCTTTTCTGTTTCCCACGACCGGGA 365
Query 349 CTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGT 425
Query 409 TTCTCATCGGACAATTTAGCTTGCTCTGGATTGACCAACAGAAGAGGCTAAATTTCAATG 468
|||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 426 TTCTGATTGGACAATTTAGCTTGCTCTGGATTGACCAGCAGAAGAGGCTTAATTTCAATG 485
Query 469 TTGATGTGGTTGAGAGTGAGTGGGGACAAGGTGCTAATCTCCAAGTCTTAGCCTCAAAGC 528
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 486 TTGATGTGGTTGAGAGTGATTGGGGACAAGGTGCTAATCTCCAAGTCTTGGCCTCAAAGC 545
Query 529 TCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGA 605
Query 589 CCGGAGTCACTAATGACATCTCTGCTGTCCGCACACTCCTTGATCACTACAAGCACCCGG 648
||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 606 CCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGATCACTACAAGCATCCGG 665
Query 649 CTTTGCTGCTAGTGGACGGTGTCTCGTCCATTTGTGCGATTGATTTCCGAATGGATGAGT 708
|||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||
Sbjct 666 CTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTGCGCGCTTGATTTCCGAATGGATGAGT 725
Query 709 GGGGAGTGGACGTGGCCTTGACCGGCTCTCAGAAAGCCTTGTCTCTTCCAACAGGACTTG 768
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 726 GGGGAGTGGACGTGGCCTTGACTGGGTCTCAGAAAGCCTTATCTCTTCCAACAGGACTTG 785
Query 769 GTATTGTGTGCGCCAGTCCTAAAGCCTTGGAAGCTACCAAAACTTCTAAATCTCTCAAAG 828
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 786 GTATTGTCTGCGCCAGTCCTAAAGCTTTGGAAGCTACCAAAACTTCTAAATCTCTCAAAG 845
Query 829 TATTCTTTGATTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACATATTGGCCTTACA 888
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 846 TATTCTTTGACTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACCTATTGGCCATACA 905
Query 889 CACCTTCCATTCAACTCCTCTACGGTCTTAGAGCTGCTCTTGATCTTATATTTGAGGAAG 948
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 906 CACCTTCCATTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAG 965
Query 949 GACTTGAGAATATCATCGCGCGGAATGCTCGTCTTGG-AAAGGCCACCAGGCTTGCGGTG 1007
|||||||||| |||||||| || |||||||| |||| ||||||||||||||||||||||
Sbjct 966 GACTTGAGAACATCATCGCCCGCCATGCTCGT-TTGGGAAAGGCCACCAGGCTTGCGGTG 1024
Query 1008 GAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAGTGGATAAGTAACACTGTCACC 1067
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1025 GAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATGGATAAGTAACACAGTGACA 1084
Query 1068 GCAGTTATGGTGCCTCCGCATATAGACAGTTCGGAGATTGTGAGAAGGGCATGGAAGAGG 1127
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1085 GCAGTTATGGTGCCTCCGCATATAGACGGTTCGGAGATTGTGAGAAGGGCATGGCAGAGG 1144
Query 1128 TACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGA 1204
Query 1188 CATCTAGGAAACGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATA 1247
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CACCTAGGAAATGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATA 1264
Query 1248 CTGAAGGATGTTGGGTACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCTTCTACTTAT 1307
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1265 CTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTAT 1324
Query 1308 CTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAATCCATTTG-TCCctctctttc 1366
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 1325 CTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAATCCATGTGGTCCTTCTCTTTC 1384
Query 1367 tttctcttcctctcaatgtaaacaa-ctctcatgctttctcttttctccatctATATCTT 1425
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||
Sbjct 1385 TTTCTCTTCCTCTCAATGTAAACAAACTCTCATGTTTTCTCTTTTCTTCATCTATATTTT 1444
Query 1426 TACTACATTATCTATGTTTTTATTTGCTATCTCCAACAAACTTATTAAACAAAAGGTCAA 1485
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1445 TACTACATTATCTATGTTTTTATTTGCTATCTCCAACAAACTTATTGAACAAAAGATCAA 1504
Query 1486 ATATGTTTATTACTCACTATTAACTTTGT 1514
|||||||||||||||||||| ||||||||
Sbjct 1505 ATATGTTTATTACTCACTATAAACTTTGT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74698410960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5