BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480309
Length=2681
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13540.1 | Symbols: ENS, ABH1, CBP80, ATCBP80 | ARM repeat s... 4425 0.0
> AT2G13540.1 | Symbols: ENS, ABH1, CBP80, ATCBP80 | ARM repeat
superfamily protein | chr2:5636884-5642957 FORWARD LENGTH=2860
Length=2860
Score = 4425 bits (2396), Expect = 0.0
Identities = 2596/2692 (96%), Gaps = 16/2692 (1%)
Strand=Plus/Plus
Query 1 AAGATGAGCAATTGGAAAACTCTTCTCCTTCGCATCGGCGAAAAGGGTCCTGAGTACGGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 167 AAGATGAGCAATTGGAAAACTCTTCTCCTTCGCATCGGCGAAAAGGGACCTGAGTACGGC 226
Query 61 ACTTCCTCCGACTACAAAGACCATATCGAGACTTGTTTCGGTGTTATTCGCAGAGAAATC 120
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 227 ACTTCCTCCGACTACAAAGACCACATCGAGACTTGTTTCGGTGTCATTCGTAGAGAAATC 286
Query 121 GAGCGTTCTGGAGATCAAGTTTTGCCTTTTATACTGCAATGTGCTGAACAATTGCCTCAT 180
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 287 GAGCGTTCTGGAGATCAAGTTTTGCCTTTTCTACTACAATGTGCTGAACAATTGCCTCAT 346
Query 181 AAGATTCCTTTGTATGGGACTTTGATTGGTTTGTTGAACTTGGAGAATGAAGATTTTGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAGATTCCTTTGTATGGGACTTTGATTGGTTTGTTGAACTTGGAGAATGAAGATTTTGTC 406
Query 241 CGGAAGCTAGTAGAAAGTGTCCACGCTGATTTCCAGGTCGCTTTAGATTCTGGCAACTGC 300
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 407 CAGAAGCTAGTAGAAAGTGTCCACGCTAATTTCCAGGTCGCTTTAGATTCTGGCAACTGC 466
Query 301 AACAGTATCCGTATATTGCTTCGCTTTATGACGTCCCTGTTGTGCAGTAAGGTTATTCAA 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 467 AACAGTATCCGTATATTGCTTCGCTTTATGACTTCCCTGTTGTGCAGTAAGGTTATTCAA 526
Query 361 CCTGCTTCTTTGATTGTCGTGTTCGAAACATTGTTATCATCTGCTGCCACTACTGTGGAC 420
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 527 CCTGCTTCTTTGATTGTCGTCTTCGAAACATTGCTATCATCTGCTGCCACTACTGTGGAT 586
Query 421 GAAGAGAAAGGAAATACATCATGGCAGCCACAAGCTGACTTTTACGTCATATGCATCTTG 480
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 587 GAAGAGAAAGGAAATCCATCATGGCAGCCACAAGCTGACTTTTACGTTATATGCATCTTG 646
Query 481 TCCAGCCTCCCGTGGGGAGGATCAGAACTCGCTGAGCAAGTTCCTGATGAGATTGAAAGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TCCAGCCTCCCGTGGGGAGGATCAGAACTCGCTGAGCAAGTTCCTGATGAGATTGAAAGA 706
Query 541 GTGTTAGTTGGGATACAAGCTTATTTGAGCATCCGAAAGAATTCTTCCACATCTGGGTTA 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 707 GTGTTAGTTGGGATACAAGCTTATTTGAGCATCCGAAAGAATTCTTCCACCTCTGGGTTA 766
Query 601 AACTTTTTTCACAACGGAGAATTTGAAAGCAGCCTTGCAGAGAAGGATTTCGTGGAGGAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AACTTTTTTCACAACGGAGAATTTGAAAGCAGCCTTGCAGAGAAGGATTTCGTGGAGGAT 826
Query 661 CTATTGGATCGAATACAGTCTCTGGCTTCCAATGGATGGAAACTTGATAGTGTTCCTAGG 720
|||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct 827 CTATTGGATCGAATTCAGTCTCTGGCTTCCAATGGATGGAAACTTGAAAGCGTACCTAGG 886
Query 721 CCTCATCTCTC-TTTCGAAGCTCAACTCGTTGCTGGAAAGTTTCATGAGCTAGGCCCCAT 779
||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 887 CCTCATCTCTCGTTT-GAAGCTCAACTCGTTGCTGGAAAGTTTCATGAGCTACGTCCCAT 945
Query 780 TAAATGTATGGAACAACCGAGTCCACCTTCTGATCATTCGAGAGCATACAGTGGCAAGCA 839
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 946 TAAATGTATGGAACAACCGAGTCCACCTTCTGATCATTCGAGGGCATACAGTGGCAAGCA 1005
Query 840 AAAGCATGATGCTTTGACGAGATATCCCCAGAGAATTCGTAGGTTGAATATCTTTCCAGC 899
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1006 AAAGCATGATGCATTGACGAGATATCCCCAGAGAATTCGTAGGTTGAATATATTTCCAGC 1065
Query 900 TAATAAAATGGAGGATGTACAACCTATCGATCGCTTTGTCGTGGAGGAGTATTTGCTGGA 959
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1066 TAATAAAATGGAGGATGTACAACCAATTGATCGTTTTGTCGTGGAGGAGTATTTGCTGGA 1125
Query 960 TGTGCTCTTCTATTTAAATGGATGTCGGAAGGAGTGTGCGTCCTACATGGCTAATCTTCC 1019
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1126 TGTGCTCTTCTATTTGAATGGATGTCGGAAGGAGTGTGCATCCTACATGGCTAATCTTCC 1185
Query 1020 TGTTCCTTTTCGGTATGAGTATCTTATGGCAGAGACACTATTTTCTCAGATACTGCTGCT 1079
|||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TGTTACATTTCGGTACGAGTATCTTATGGCAGAGACACTATTTTCTCAGATACTGCTGCT 1245
Query 1080 ACCACAACCACCATTCAAGACTCTTTATTATACACTCGTGATTATGGATCTTTGTAAGGC 1139
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 ACCCCAGCCACCATTCAAGACTCTTTATTATACACTCGTGATTATGGATCTTTGTAAGGC 1305
Query 1140 TCTTCCGGGTGCCTTTCCTGCTGTTGTTGCTGGTGCTGTTCGTGCACTATTTGAGAAAAT 1199
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1306 TCTTCCGGGTGCCTTTCCTGCTGTTGTTGCTGGCGCTGTTCGTGCACTATTTGAGAAAAT 1365
Query 1200 TTCCGACTTAGACATGGAATCCAGGACACGCCTTATCCTCTGGTTTTCTCACCACTTGTC 1259
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1366 ATCCGACTTAGACATGGAATCCAGGACGCGTCTTATCCTCTGGTTTTCTCACCACTTATC 1425
Query 1260 CAACTTCCAATTCATCTGGCCGTGGGAAGAGTGGGCTTATGTGTTGGACCTTCCCAAGTG 1319
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1426 CAACTTCCAATTCATCTGGCCGTGGGAAGAGTGGGCTTTTGTGTTGGATCTTCCCAAGTG 1485
Query 1320 GGCCCCTAAGCGTGTATTTGTTCAGGAGATTTTGCAAAGAGAAGTACGCTTGTCTTACTG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GGCCCCTAAGCGTGTATTTGTTCAGGAGATTTTGCAAAGAGAAGTACGCTTGTCTTACTG 1545
Query 1380 GGATAAAATTAAGCAGAGCATTGAGAATGCGAGC-GCCCTAGAAGAATTGCTTCCTCCAA 1438
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 1546 GGATAAAATTAAGCAGAGCATTGAGAATGCGA-CTGCCCTAGAAGAATTACTTCCTCCAA 1604
Query 1439 AGGCTGGTCCGAATTTTATGTATTCCTTGGAAGAGGGTAAAGAGAAAACAGAAGAACAGC 1498
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1605 AAGCTGGTCCGAATTTTATGTATTCCTTGGAAGAAGGTAAAGAGAAAACAGAAGAACAGC 1664
Query 1499 AATTGTCAGCCGAATTGAGCAGGAAGGTTAAGGAAAAACAAACTGCACGTGACATGATGG 1558
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1665 AATTGTCAGCCGAATTGAGCAGGAAGGTCAAGGAAAAACAAACCGCACGTGACATGATAG 1724
Query 1559 TGTGGATTGAGGAAACGATATATCCAGTTCATGGTTTTGAAGTCACTCTTACAATAGTTG 1618
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1725 TGTGGATTGAAGAAACGATATATCCAGTTCATGGTTTTGAAGTTACTCTTACAATAGTTG 1784
Query 1619 TACAGACCTTACTTGACATCGGATCAAAAAGTTTCACTCATTTGGTCACTGTCCTGGAGC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 TACAGACCTTACTTGACATCGGATCAAAAAGTTTCACTCATTTGGTCACTGTCCTGGAGC 1844
Query 1679 GATATGGCCAAGTATTTTCAAAACTTTGTCCTGATAATGATAAGCAGGTGATGCTATTAT 1738
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1845 GATATGGCCAAGTATTTTCAAAGCTTTGTCCTGATAACGATAAGCAGGTGATGCTATTAT 1904
Query 1739 CTCAAGTGAGTACATACTGGAAAAACAATGTACAAATGACGGCGGTGGCAATCGATAGGA 1798
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1905 CTCAAGTGAGTACATACTGGAAAAACAATGTACAAATGACGGCGGTGGCAATTGATAGGA 1964
Query 1799 TGATGGGTTATAGACTAGTATCTAATCAGGCAATTGTTAGATGGGTGTTCTCTCCAGAAA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TGATGGGTTATAGACTAGTATCTAATCAGGCAATTGTTAGATGGGTGTTCTCTCCAGAAA 2024
Query 1859 ATGTTGATCAATTCCATGTGTCTGATCAGCCATGGGAGATACTTGGCAATGCTCTTAACA 1918
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 ATGTTGATCAGTTTCATGTGTCTGATCAGCCATGGGAGATACTTGGCAATGCTCTTAACA 2084
Query 1919 AGACTTATAACCGTATCTCTGATTTGAGGAAAGATATATCAAACATTACGAAAAATGTTT 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 AGACTTATAACCGTATCTCTGATTTGAGGAAAGATATATCAAACATTACGAAAAATGTTT 2144
Query 1979 TGGTTGCTGAGAAAGCTTCAGCCAATGCACGAGTAGAGTTGGAGGCTGCTGAGAGCAAAC 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 TGGTTGCTGAGAAAGCTTCAGCCAATGCACGAGTAGAGTTGGAGGCTGCTGAGAGCAAAC 2204
Query 2039 TTTCCCTAGTGGAGGGTGAGCCCGTTCTTGGTGAGAATCCAGCGAAGATGAAGCGTTTAA 2098
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 TTTCCCTAGTGGAAGGTGAACCCGTTCTTGGTGAGAATCCAGCGAAGATGAAGCGTTTAA 2264
Query 2099 AATCAACAGTGGAGAAGACAGGAGAAGCGGAGTTATCTCTTCGTGAGTCCCTAGAGGCAA 2158
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2265 AATCAACAGTGGAGAAGACAGGGGAAGCGGAGTTATCTCTTCGGGAGTCCCTAGAGGCAA 2324
Query 2159 AAGAGGCTCTTCTTAACAGAGCTCTCTCTGAGACCGAGGTTCTACTGCTCTTGCTGTTCC 2218
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2325 AAGAGGCTCTTCTTAACAGAGCTCTCTCTGAGACCGAGGTTTTACTGCTCTTGCTGTTCC 2384
Query 2219 AAAGTTTCTTAGGTGTATTGAAGGAACGTCTCCCAGATCCAACAAAAGTGATATCAGTGC 2278
||||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 2385 AAAGTTTCTTAGGTGTACTGAAGGAACGGCTCCCAGATCCAACTAAAGTGAGATCAGTGC 2444
Query 2279 AGGATCTAAAATCTATAGGAGCGGAAGATGACAAGCCATCTGCGATGGACGTGGACAGTG 2338
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 2445 AGGATCTAAAATCTATAGGTGCTGAAGATGACAAGCCATCTGCGATGGACGTGGACAGCG 2504
Query 2339 AGAATGGAAACCCAAAGAAGAGTTGTGAAGTCGGTGAGAGAGAACAGTGGTGCTTATCAA 2398
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2505 AGAATGGAAACCCAAAGAAGAGTTGCGAAGTCGGTGAGAGAGAACAGTGGTGCTTATCAA 2564
Query 2399 CACTTGGCTATCTCACGGCATTTACAAGGCAATATGCGAGCGAGATATGGCCTCACATGG 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2565 CACTTGGCTATCTCACGGCATTTACAAGGCAATATGCGAGCGAGATATGGCCTCACATGG 2624
Query 2459 AGAAGTTGGAGTCGGAGGTGTTCTCGGGTGAAGATGTGCATCCTCTCTTTCTTCAAGCCA 2518
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2625 AGAAGTTGGAGTCAGAAGTGTTCTCGGGTGAAGATGTGCATCCTCTCTTTCTCCAAGCCA 2684
Query 2519 TATCTTCTGCGCTTCAATTCCCATTACAATAATC--C-TCTTTCAATCTCAA--A--C-T 2570
|||||||||| ||||||||||||||||| ||||| | |||||||||||||| | | |
Sbjct 2685 TATCTTCTGCACTTCAATTCCCATTACATTAATCTTCCTCTTTCAATCTCAATCAAACCT 2744
Query 2571 GGTCTCTTTTGTTTTT-GTTATCAGATTCTGATTTTGACATTCAAGTTTATTAGGAAATC 2629
| |||||||||||||| ||||| ||||||||||| |||||| |||||| ||||||||||
Sbjct 2745 G-TCTCTTTTGTTTTTTGTTATGAGATTCTGATTCTGACAT-CAAGTT-ATTAGGAAATT 2801
Query 2630 GAAAAGAATCATAAAACAAGAGTTTAAACTTTAAACAGCAGTATTGTTTCTG 2681
||||||| ||| |||||||||||||||||||| |||| |||| |||||||||
Sbjct 2802 GAAAAGAGTCAAAAAACAAGAGTTTAAACTTTTAACACCAGTCTTGTTTCTG 2853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133143066722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5