BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480313
Length=2121
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13610.1 | Symbols: | ABC-2 type transporter family protein... 3358 0.0
> AT2G13610.1 | Symbols: | ABC-2 type transporter family protein
| chr2:5673688-5675831 REVERSE LENGTH=2144
Length=2144
Score = 3358 bits (1818), Expect = 0.0
Identities = 2024/2125 (95%), Gaps = 8/2125 (0%)
Strand=Plus/Plus
Query 1 AAagagagagagagaACAAAGATTCTTCTTCAATGGAGAAGGAAGGGTGTGAGATTGAAG 60
||||| ||||||||||||||| |||||| |||||||||||| |||| |||||||| ||||
Sbjct 24 AAAGAAAGAGAGAGAACAAAGCTTCTTCATCAATGGAGAAGCAAGGATGTGAGATCGAAG 83
Query 61 CTTTAGATATTGATTACAACATCTTTGTAAGGAAGTTTAATGTTAAT-CCTTTCGGAATC 119
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 84 CTTTAGATATTGATTACAACATCTTTGTAAGGAAGATTAATGTTAATCCCTTT-GGAATC 142
Query 120 TTTAGGCGGAAACCGCGGCCGGAAGCTGACCAGCCGGTTAAGACGGAAGAAGAGTCATGG 179
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |
Sbjct 143 TTTAGGCGGAAACCGCGGCCGGAAGCTGACCAGCCGGTAAAGACAGAGGAAGAGTCATTG 202
Query 180 AAGCTAGAGGATGAAACCGGCAACAAAGTCAAGCATGTACTAAAAGGAGTGACTTGCAGA 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 203 AAGCTAGAGGATGAAACCGGTAACAAAGTCAAGCATGTACTAAAAGGAGTGACTTGCAGA 262
Query 240 GCCAAACCATGGGAGATTCTTGCTATTGTTGGCCCAAGTGGCGCAGGGAAGTCTTCTTTG 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 263 GCCAAACCATGGGAGATTCTTGCTATTGTTGGCCCAAGTGGTGCAGGGAAGTCGTCTTTG 322
Query 300 CTTGAAATTCTAGCTGCTAGACTCATCCCTCAAACCGGGTCGGTTTTTGTCAACAAGAGA 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 323 CTTGAAATTCTAGCTGCTAGACTCATCCCTCAAACCGGGTCGGTTTATGTCAACAAGAGA 382
Query 360 CCGGTGGATAGAGCCAATTTCAAGAAAATCTCTGGTTATGTCACTCAGAAGGACACTCTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 383 CCGGTGGATAGAGCCAATTTCAAGAAAATCTCTGGTTATGTCACTCAGAAGGATACTCTG 442
Query 420 TTTCCTTTGCTTACGGTGGAGGAAACCCTTCTGTTCAGTGCTAAGCTGCGTTTAAAGCTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TTTCCTTTGCTTACGGTGGAGGAAACCCTTCTGTTCAGTGCTAAGCTGCGTTTAAAGCTC 502
Query 480 CCTGCAGATGAACTGAGATCACGGGTTAAGTCGTTGGTCCATGAGCTTGGGCTAGAAGCT 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 503 CCTGCAGATGAACTGAGATCACGGGTTAAGTCTTTGGTCCATGAGCTTGGGCTTGAAGCT 562
Query 540 GTTGCTAAGGCTCGTGTTGGCGATGATAGTGTCAGAGGGATATCGGGTGGAGAGAGACGC 599
||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 563 GTTGCCACGGCTCGTGTTGGCGATGATAGTGTCAGAGGTATATCGGGTGGAGAGAGACGT 622
Query 600 CGTGTCTCCATAGGAGTTGAAGTTATTCACGACCCCAAAGTTCTGATCCTTGATGAGCCA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 623 CGTGTCTCCATAGGAGTTGAAGTTATTCACGACCCCAAAGTTCTGATCCTTGATGAACCA 682
Query 660 ACCTCTGGTCTTGATAGTACTTCGGCTCTGCTGATCATAGACATGCTCAAGCACATGGCT 719
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 683 ACCTCTGGGCTTGATAGTACTTCGGCTCTGCTGATCATAGACATGCTCAAACACATGGCT 742
Query 720 GAAACACGAGGCAGGACCATAATTCTGAGTATCCATCAACCGGGATTTCGGATAGTCAAA 779
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 743 GAAACACGAGGCAGGACCATAATTCTGACTATCCACCAACCGGGATTTCGGATAGTCAAA 802
Query 780 CAGTTCAATTCTGTTCTTTTGTTGGCCAATGGTTCGACGTTGAAGCAAGGCTCGGTGGAT 839
||||||||||||||||| |||||||||||||| ||||| |||||||| || |||||||||
Sbjct 803 CAGTTCAATTCTGTTCTCTTGTTGGCCAATGGCTCGACCTTGAAGCAGGGGTCGGTGGAT 862
Query 840 CAGCTTGGCGTGTTT-TTAAGGTCAAATGATTTGCACCCTCCTCTCCATGAAAACATCGT 898
||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 863 CAGCTTGGCGT-TTACTTAAGGTCAAATGGTTTGCACCCTCCTCTCCATGAAAACATCGT 921
Query 899 AGAATTCGCCATTGAATCAATCGAAGCAATCACAAAACAGCAACGGCTACAGGAAAGCAG 958
||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 922 TGAATTTGCCATTGAATCAATCGAATCCATCACAAAACAGCAACGGCTACAGGAAAGCAG 981
Query 959 AAGAGCAGCTCATGTTCTAACATCACAAACAACATTACAAGAGAAGAGATCAGAAGATAG 1018
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 982 AAGAGCAGCTCATGTCCTAACACCACAAACAACATTACAAGAGAAGAGATCAGAAGATAG 1041
Query 1019 TCAAGGGGAGAGCAAAAGTGGCAAATTCACACTACAACAGCTGTTTCAACAAACAAGGGT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 TCAAGGGGAGAGCAAAAGTGGCAAATTCACACTACAACAGCTGTTTCAACAAACAAGGGT 1101
Query 1079 TGCTGATGTAGGAAGGATGAACATAGCAACGGAGTTCACCAGAGATTTTGCAAATTCAAG 1138
||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1102 CGCTGATGTAGGAACGATGAACATAGCAACAGAGTTCACAAGAGATTTTGCAAATTCAAG 1161
Query 1139 ACTAGAAGAAACTATGATACTCACCCATAGGTTCTCCAAGAACATATTCAGAACCAAAGA 1198
| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1162 ATTAGAAGAAACTATGATACTCACACATAGGTTCTCCAAGAACATTTTCAGAACCAAGGA 1221
Query 1199 GCTTTTTGCGTGCAGGACGGTTCAGATGTTAGGTTCAGGGATTGTTCTAGGTCTGATTTT 1258
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1222 GCTTTTTGCGTGCAGGACGGTTCAGATGTTAGGTTCAGGAATTGTCCTAGGTCTGATTTT 1281
Query 1259 TCATAATCTCAAAGACGATTTAAAAGGTGCACGAGAAAGAGTCGGCCTCTTTGCATTCAT 1318
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1282 TCATAATCTCAAAGACGATTTAAAAGGTGCGCGAGAAAGAGTCGGCCTCTTTGCATTCAT 1341
Query 1319 ATTGACCTTCCTGCTAACTTCAACAATAGAGGCACTCCCTATATTTCTGCAAGAGAGAGA 1378
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1342 ATTGACCTTTCTGCTAACTTCGACAATAGAGGCACTCCCTATATTTCTGCAAGAAAGAGA 1401
Query 1379 GATTCTGATGAAGGAAATATCTAGTGGAAGCTACAGAGTGTCGTCATATGCCATCGCTAA 1438
||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1402 GATTCTGATGAAGGAGACCTCTAGTGGAAGCTACAGAGTGTCTTCATATGCCGTCGCTAA 1461
Query 1439 TGGGCTTGTTTACTTGCCATTTCTGCTCATCCTAGCTATTCTATTCTCA-CTCCCAGTGT 1497
||| || |||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1462 TGGACTAGTTTACTTGCCATTTCTGCTCATCCTAGCTATTCTATTCTCAAC-CCCAGTGT 1520
Query 1498 ACTGGCTGGTGGGACTGAACCCTAATTTCATGGCATTTCTGCACTTTTTGCTCCTAATTT 1557
|||||||||||||||||||||| | ||||||||| ||||| ||||||| |||||| ||||
Sbjct 1521 ACTGGCTGGTGGGACTGAACCCCAGTTTCATGGCGTTTCTACACTTTTCGCTCCTCATTT 1580
Query 1558 GGTTGATCCTCTACACAGCAAACTCAGTGGTTGTGTGCTTTAGTGCGCTGGTTCCTAATT 1617
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1581 GGTTGATCCTCTACACAGCAAACTCGGTGGTTGTGTGCTTTAGTGCACTGGTTCCTAATT 1640
Query 1618 TCATTGTTGGAAATTCAGTGATTTCCGGTGTGATGGGTTCCTTCTTTCTGTTCTCCGGAT 1677
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1641 TCATAGTTGGAAACTCAGTGATTTCCGGTGTGATGGGTTCCTTCTTTCTGTTCTCCGGCT 1700
Query 1678 ACTTCATATCGAACCATGAGATCCCTGGTTACTGGATTTTCATGCACTACATCTCCTTGT 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 ACTTCATATCGAACCATGAGATCCCTGGTTACTGGATTTTCATGCACTACATCTCCTTGT 1760
Query 1738 TCAAGTATCCGTTTGAAGGATTTCTGATTAACGAGTTCTCCAAGTCAAGCAAGTGTTTGG 1797
||||||| ||||| |||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 1761 TCAAGTACCCGTTCGAAGGATTTCTGATTAACGAGTTCTCAAAATCAAACAAGTGTTTGG 1820
Query 1798 AGTATGGATTCGGAAAATGCTTGGTGACCGAGGAGGATCTACTAAAAGAAGAAAGGTATG 1857
||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |
Sbjct 1821 AGTATGGATTCGGAAAATGTTTGGTGACTGAGGAGGATCTACTCAAAGAAGAAAGGTACG 1880
Query 1858 GAGAGGAAAACAGATGGAGGAATGTTGTGATCATGCTATGTTTTGTCTTGCTCTACAGGT 1917
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GAGAGGAAAGTAGATGGAGAAATGTTGTGATCATGCTATGTTTTGTCTTGCTCTACAGGT 1940
Query 1918 TCATTTCCTATGTGATTCTGAGGTGTAGATGTTCCCAACGAAGTTTCAAAACCGCTCTTG 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1941 TCATTTCCTATGTGATTCTGAGGTGTAGATGTTCCCAACGAAGTTTCAAAACCACTCTCG 2000
Query 1978 CTTAACAAATGTGTTAACAATAATGTCTTTTCTGCAAAACATTGGGTTACAGGTTTGTTC 2037
||||| ||||||| || |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2001 CTTAATAAATGTGGTAGCAATAATGTCCTTTCTGAAAAACATTGGGTTACAGGTTTGTTC 2060
Query 2038 ATGTGTTTAATTATTTACTTCGTACAGCAACCGAAGATGTGAAAGAAAACGTTGTTTATG 2097
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2061 ATGTGTTTAATTATTTACTTCGTACAGCAACCGAAGATGTGAAAGAAAATGTTGTTTCTG 2120
Query 2098 CAAAA-GAAAATTTCCATTGATTCT 2121
||||| |||| ||||||||||||||
Sbjct 2121 CAAAATGAAA-TTTCCATTGATTCT 2144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105170141775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5