BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480315
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13650.1 | Symbols: GONST1 | golgi nucleotide sugar transpor... 1834 0.0
> AT2G13650.1 | Symbols: GONST1 | golgi nucleotide sugar transporter
1 | chr2:5687378-5690771 REVERSE LENGTH=1463
Length=1463
Score = 1834 bits (993), Expect = 0.0
Identities = 1180/1266 (93%), Gaps = 30/1266 (2%)
Strand=Plus/Plus
Query 77 AAGTTGAATC--T-CTTCGCGAGCTTTT-GAGCAGCTTCGAGGTCTTAGCCTTGCAATGA 132
|||||||||| | ||||||||||||| || || ||||||||||||||| |||||||||
Sbjct 201 AAGTTGAATCTTTAGTTCGCGAGCTTTTGGA-CAACTTCGAGGTCTTAGCTTTGCAATGA 259
Query 133 AATCGTATGAACACGATGGAGTTGATTTAGAAGATGGGAAGACAGGGAAATCC---GGAG 189
||| ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 260 AATTGTACGAACACGATGGAGTTGATTTAGAAGATGGGAAGACAGTAAAATCCGGAGGAG 319
Query 190 ATAAGCCAATTCAAAGAAAGATACATAATCGGGCTTTGTTATCGGGTTTAGCTTATTGCA 249
|||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 320 ATAAACCAATTCCAAGAAAGATACATAACCGGGCTTTGTTATCCGGTTTAGCTTATTGCA 379
Query 250 TTTCATCATGTAGTATGATACTTGTGAACAAGTTTGTCCTTTCCAGCTACAACTTCAATG 309
|||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 380 TTTCATCATGCAGTATGATACTTGTCAACAAGTTTGTTCTCTCCAGCTACAACTTCAATG 439
Query 310 CTGGAATATT-TTTAATGTTATACCAGAACTTTGTCTCAGTGATTATTGTGGTTGGTTTG 368
|||| || || || ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 440 CTGGGATCTTCCTT-ATGTTATACCAGAACTTTGTCTCGGTGATCATTGTGGTTGGTTTG 498
Query 369 AGCTTAATGGGTCTAATAACAACAGAACCGCTTACTTTGAGGTTGATGAAGGTCTGGTTT 428
|| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 499 AGTTTAATGGGTCTAATAACTACTGAACCACTTACTTTGAGGTTGATGAAGGTCTGGTTT 558
Query 429 CCAGTGAACGTGATATTTGTTGGTATGCTTATCACAAGCATGTTTAGTTTGAAATACATC 488
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CCAGTGAATGTCATCTTTGTTGGTATGCTTATCACAAGCATGTTTAGTTTGAAATACATC 618
Query 489 AATGTAGCAATGGTCACTGTCCTGAAGAATGTCACTAATGTGATAACTGCAGTTGGTGAG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 AATGTAGCAATGGTCACTGTCCTGAAGAATGTCACTAATGTGATAACTGCAGTTGGTGAG 678
Query 549 ATGTATCTATTCAACAAGCAACATGACAACAGAGTGTGGGCTGCTCTCTTCTTAATGATA 608
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 ATGTATCTGTTCAACAAGCAACATGACAACAGAGTGTGGGCTGCTCTCTTCTTAATGATA 738
Query 609 ATTTCCGCAGTTTCTGGAGGGATAACAGACCTATCATTCAATGCTGTTGGCTATGCTTGG 668
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 739 ATTTCCGCAGTTTCTGGAGGAATAACAGACCTATCATTCAATGCTGTTGGCTATGCTTGG 798
Query 669 CAGATTGCTAATTGCTTCTTAACTGCATCGTACTCTCTGACTTTGAGAAAGACCATGGAT 728
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 799 CAGATTGCTAATTGCTTCTTAACTGCATCGTACTCGCTGACTTTGAGAAAGACCATGGAT 858
Query 729 ACGGCCAAGCAGGTTACTCAATCTGGAAACTTGAACGAGTTCTCTATGGTCTTGCTTAAT 788
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 859 ACGGCCAAGCAGGTTACTCAATCTGGAAACTTGAACGAGTTCTCCATGGTCTTGCTTAAT 918
Query 789 AATACACTTTCATTACCACTTGGGCTTCTTCTTTCTT-TTTCCTTCAACGAGATGGATTA 847
|| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 919 AACACACTTTCATTACCACTTGGGCTTCTTCTTTCTTATTTC-TTCAACGAGATGGATTA 977
Query 848 TCTGTATCAAACGCCACTTCTGCGATTGCCAAGTTTCTGGATGGTCATGACACTTAGTGG 907
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 978 TCTCTATCAAACGCCACTTCTACGATTACCAAGTTTCTGGATGGTCATGACACTTAGTGG 1037
Query 908 ACTTTTAGGGCTTGCCATTAGCTTCACTTCAATGTGGTTTCTTCATCAAACTGGAGCAAC 967
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1038 ACTTCTAGGGCTTGCCATTAGCTTTACTTCAATGTGGTTTCTTCATCAAACTGGAGCAAC 1097
Query 968 AACATACAGCCTGGTGGGATCACTAAACAAGATACCTCTATCCATCGCGGGGATTGTTCT 1027
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1098 AACATACAGCCTGGTGGGATCTCTAAACAAGATACCTCTATCCATCGCGGGGATCGTTCT 1157
Query 1028 GTTCAATGTACCGACCAGTTTGCAGAACTCGGCAAGCATACTCTTTGGTCTTGTTGCTGG 1087
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1158 TTTCAATGTACCGACCAGTTTGCAGAACTCAGCAAGCATACTCTTTGGTCTTGTCGCTGG 1217
Query 1088 AGTTGTATTTGCCAGAGCCAAAATGAGGGAGAAGTCCTAAAA--C-AAC-A-C-A----- 1136
|||||||||||| ||||||||||||||||||||||||||||| | ||| | | |
Sbjct 1218 AGTTGTATTTGCTAGAGCCAAAATGAGGGAGAAGTCCTAAAATACTAACCATCTACAACA 1277
Query 1137 --TTTTACTACATCAGTCAGTATAGGACATGGCAAAAGATGATTATAGCAGAACAATGAG 1194
||||||||||||| |||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 1278 CATTTTACTACATCAATCAGTATAGGACATGGCAAAAGCTGATTAAAGCAGAGCAATGAG 1337
Query 1195 TTTATAACCTCAAAATTCTATTCACAATATGTGTTTCTTGTAAAAGCATTC-----TCTA 1249
|||||||||||| |||||||| ||| |||||||||||||||||||| ||| ||||
Sbjct 1338 TTTATAACCTCAGAATTCTATGCACGTTATGTGTTTCTTGTAAAAGCTTTCGCCACTCTA 1397
Query 1250 CTTGTAGAATTTTAGTAAAATATTAATGAATGTATTGATTCTTGAGTGGTAAGAGAAGTG 1309
|||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1398 CTTGTATAATGTTAGTAAAATATTAATGAATGTATCGATTCTTGAGTGGTAAGAGAAGTG 1457
Query 1310 CTGGTT 1315
|||||
Sbjct 1458 TTGGTT 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64708502505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5