BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480324
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13810.1 | Symbols: ALD1 | AGD2-like defense response protei... 2414 0.0
> AT2G13810.1 | Symbols: ALD1 | AGD2-like defense response protein
1 | chr2:5768446-5772259 FORWARD LENGTH=1535
Length=1535
Score = 2414 bits (1307), Expect = 0.0
Identities = 1437/1501 (96%), Gaps = 3/1501 (0%)
Strand=Plus/Plus
Query 1 GAAGCTGTCATAACTTGCAAGTAAAGAATGGTCAGTCTAATGTTCTGTAGTTCGGCCTCA 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 17 GAAGCCGTCATAACTTGCAAGTAAAGAATGGTCAGTCTAATGTTCTTTAGTTCGGCCTCA 76
Query 61 CCTTTATGCTCTTCTCCATCAAAAATTACCAAGGCTAGTTTGGACTTCGATATGAAGAAA 120
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 77 CCTTTATGCTCTTCTCCATCAAAAATTCCCAAGGCTAGTTTGGACTTCGAGATGAAGAAA 136
Query 121 CTTGGTGGCAGCACAAAACTTGTCCGGAACGTGAATTTGGAGAAACTAAAGAACAATTAT 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 137 CTTGGTGGCAGCACAAAACTTGTTCGGAACGTGAATTTGGAGAAACTAAAGAACAATTAT 196
Query 181 TTGTTTCTTGAAATCAACAGACGTGAGCTTGAGCACATTGAAAAGCATCCAAATGTACAA 240
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 197 TTGTTTCCTGAAATCAACAGACGTGAACTTGAGCACATTGAAAAGCATCCAAATGTACAA 256
Query 241 TTGATAAGCCTTGGGACTGGTGATACAACAAAGCCTATACCAGAGCAAATAACCTCACAT 300
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 257 TTGATAAGCCTTGGGACTGGTGATACAACAGAGCCTATTCCAGAGCAAATAACCTCACAT 316
Query 301 ATGTCTAACTTCGCACATGGCCTATCGACGGTAGAAGGAAATAGAGGGTATGGACTGGAA 360
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 317 ATGTCTAACTTCGCACATGGCCTATCGACCGTAGAAGGATATAGAGGGTATGGGTTGGAA 376
Query 361 CAAGGAAATAAGACCCTGCGAAAAGCTATTGCTGAAACGTTTTATAGAGATCTGCACGTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 377 CAAGGAAATAAGACCCTGCGAAAAGCTATTGCTGAAACGTTTTATAGAGATTTGCACGTA 436
Query 421 AAAAGCAATGAAGTTTTTGTATCAGATGGTGCACAAAGTGATATTTCTCGTCTTCAGTTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 437 AAAAGCAATGAAGTTTTTGTATCAGATGGTGCACAAAGTGATATTTCTCGTCTTCAGCTA 496
Query 481 CTCCTAGGCTCCAACGTCACAATTGCTGTGCAAGATCCTACCTTCCCGGCTTACATAGAT 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CTCTTAGGCTCCAACGTCACAATTGCTGTGCAAGATCCTACCTTCCCGGCTTACATAGAT 556
Query 541 TCAAGTGTGATAATCGGTCAGACTGGTCATTTCCATGAAACAACCAAGAAGTACCAAAAT 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 557 TCAAGTGTGATAATCGGTCAGACTGGTCATTTCCATGAAAAAACCAAGAAGTACCAAAAT 616
Query 601 GTTGTCTACATGCCATGTGGGCCTAAAAATAGTTTTTTCCCTGATCTGGCTATGACCCCA 660
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 617 GTTGTTTACATGCCATGTGGGCCTAACAATAGTTTCTTCCCTGATCTGGCTATGACCCCA 676
Query 661 AGGACTGATGTCATCTTCTTTTGTTCTCCTAATAACCCTACTGGTTATGTTGCATCCAGA 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AGGACCGATGTCATCTTCTTTTGTTCTCCTAATAACCCTACTGGTTATGTTGCATCCAGA 736
Query 721 AAACAACTACATCAACTAGTTGATTTTGCAAAGAGAAATGGTTCCATAATTATTTTTGAC 780
|||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 737 AAACAACTACATCAACTAGTTGATTTTGCAAAGACCAATGGGTCCATTATTATATTTGAC 796
Query 781 TCTGCATATGCTGCTTTTATCGAAGACGATAGCCCACGTTCAATATATGAAATTCCTGGT 840
|| ||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||
Sbjct 797 TCCGCATATGCTGCTTTTATCGAAGATGGTAGTCCACGTTCTATATATGAAATTCCTGGT 856
Query 841 GCTAGAGAGGTCGCGATTGAAGTTTCTTCATTCTCTAAGTTTGCGGGTTTCACCGGTGTT 900
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 857 GCTAGAGAGGTCGCGATTGAAGTTTCATCATTCTCTAAGTTTGCGGGTTTCACCGGTGTT 916
Query 901 CGGCTTGGTTGGACTATCATCCCTGATGAGCTCTTGTACTCTAATGGTTTTCCCATTATC 960
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 CGGCTTGGTTGGTCTATCATCCCTGATGAGCTCTTGTACTCTAATGGTTTTCCCATTATC 976
Query 961 AACGATTTCCATCGCATAGTTACCACTTCCTTCAATGGAGCTTCAAATATTGCTCAGGCA 1020
|||||||||||||| || || |||||||||||||| |||||||||||||||||||||||
Sbjct 977 AACGATTTCCATCGTATTGTGACCACTTCCTTCAACGGAGCTTCAAATATTGCTCAGGCT 1036
Query 1021 GGTGGACTAGCATGCCTTTCTTCTGGTGGCCTTAAGGAGATACGGTCAGTGAACGACTAC 1080
|||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1037 GGTGGATTGGCATGCCTTTCTTCTGGTGGCCTTAAGGAGATACGGTCGGTGAACAACTAC 1096
Query 1081 TACAAAGAGAACAGGAAGATACTGATGGACACTCTAGTCTCGCTCGGCCTCAAGGTTTAT 1140
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1097 TACAAAGAGAACAGGAAGATACTGATGGACACTCTAGTCTCGCTTGGCCTCAAGGTTTAT 1156
Query 1141 GGTGGTGTAAATGCTCCATACTTGTGGGTTCACTTCAAGGGATCAAAATCATGGGACATT 1200
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1157 GGTGGTGTAAATGCTCCATACTTGTGGGTTCACTTTAAGGGATCAAAATCGTGGGACGTT 1216
Query 1201 TTTGCTGAGATTCTAGAAAACACTCATATAATAACAGTACCAGGCTCAGGTTTTGGACCC 1260
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 TTTAATGAGATTCTTGAAAACACTCATATAATAACAGTACCAGGCTCAGGTTTTGGACCC 1276
Query 1261 GGTGGAGAAGAGTATTTGAGGATTAGTGGGTTTGGACGCAGAGAGGACATTGTTGAAGCA 1320
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1277 GGTGGAGAAGAGTATTTGAGGATTAGTGGGTTTGGACGCAGAGATCACATTGTTGAAGCA 1336
Query 1321 TCGAAGAGGTTGCAGAATTTCTTTAACACACGAACCAAACATTTTACTTATCTCTCTTCC 1380
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TCAAAGAGGTTGCAGAATTTCTTTAACACACGAACCAAACATTTTACTTATCTCTCTTCC 1396
Query 1381 TCTTCTAATACCAATTAGGCTAAACACATATCGTCTTTATAAGCATCGTCTTGAATAATT 1440
|||||||||||||||||| |||| |||| |||| || || ||||||||||||||||||
Sbjct 1397 ACTTCTAATACCAATTAGGATAAATACATCTCGTGTT-ATGTGCATCGTCTTGAATAATT 1455
Query 1441 TCTCCCACCTATCTTGTACCATAATGTATATTATTGAAATAATAAAAGCTACGGGACCAT 1500
||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1456 TCTTCCACCT--CTTGTACCATAATGTATATTATTGAAATAATAAAAGCTACGAGACCAT 1513
Query 1501 G 1501
|
Sbjct 1514 G 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74045803875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5