BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480325
Length=575
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13820.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 760 0.0
> AT2G13820.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:5774146-5776289
REVERSE LENGTH=669
Length=669
Score = 760 bits (411), Expect = 0.0
Identities = 523/577 (91%), Gaps = 7/577 (1%)
Strand=Plus/Plus
Query 1 ATGTCCGGCGAGAGCGTTCATGCAGCAGTGGACTGCTCATCGTTGATACTAAACATGGCT 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 ATGTCCGGCGAGAGAGCTCATGCAGCAGTGGACTGCTCATCGTTGATACTAAACATGGCT 115
Query 61 GATTGTTTGTCGTTCGTGACTAGTGGTAGTACCGTGGTGAAGCCAGAAGGAACATGTTGT 120
|||||||||||||| ||||||||||||||||| || || ||||| |||||||||||||||
Sbjct 116 GATTGTTTGTCGTTTGTGACTAGTGGTAGTACAGTTGTCAAGCCGGAAGGAACATGTTGT 175
Query 121 TCAGGGCTTAAGACTGTGGTTAGGTCAGGACCAGAATGTCTATGTGAGGCTTTCAAGAAT 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 176 TCAGGGCTTAAGACTGTGGTTAGGACAGGACCAGAATGTCTATGTGAGGCTTTCAAGAAC 235
Query 181 AGTGCTTCTCTTGGTGTTA-CTCTTGATCTTTCTAAAGCTGCTTCTCTTCCTTCTGTTTG 239
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AGTGGTTCTCTTGGT-TTAACTCTTGATCTTTCTAAAGCTGCTTCTCTTCCTTCTGTTTG 294
Query 240 TAAAGTTGCTGCTCCTCCGTCTGCTCGTTGTGGCCTTTCTGTCGCTGGATCTCCTCCTGC 299
|||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct 295 TAAAGTTGCTGCTCCTCCTTCTGCTCGTTGTGGCCTTTCTGTCTCTGGAGATCCTCCTGC 354
Query 300 TACTGCCCCTGGTTTATCTCCCACGGCCGAAGCTGGTGCACCGGAGGTGTCCAGAGGAGC 359
||||||||||||||||||||| ||||||| ||| || ||||| | | ||||||| || ||
Sbjct 355 TACTGCCCCTGGTTTATCTCCTACGGCCGGAGCAGGAGCACCCGCGTTGTCCAGTGGTGC 414
Query 360 AAATGCCGCAACCCCAGTTCCGTCCCCGAGAAGTTCCGATGCGTCCATGCGCTCTATGTC 419
|||||| ||||| |||||| |||||||||| ||||||||||||||| ||| |||| | ||
Sbjct 415 AAATGCGGCAACTCCAGTTTCGTCCCCGAGGAGTTCCGATGCGTCCTTGCTCTCTGTATC 474
Query 420 GTTCGCATCTATCATCTTCATGGCACTCATTTCTTCTTTCAATTGAGCCTTGCAATCTAA 479
|| |||| | ||||||||||||||||||||||||||||| |||||| ||| ||| |||
Sbjct 475 TTTTGCATTTGTCATCTTCATGGCACTCATTTCTTCTTTCTATTGAGTCTTAAAATTTAA 534
Query 480 TTGCTTCTA-TTGAGTTCTTTTTGTTTGCTATGTAGCTGAAGAGTTTGGTGTTCCTAATC 538
|||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 535 TTGCTTCTTGTTGAGTTATTTTTGTTTGCTATGTAGCTGAAGAGTTTGGTGTTACTGATC 594
Query 539 ATTTTTTACCTTTCATGTTGTGTCAATTCTACTGAGA 575
|| ||| ||||||||||| || ||||| || |||||
Sbjct 595 ATATTT-ACCTTTCATGT-GT--CAATTTTAATGAGA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27628780850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5