BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480328
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14045.1 | Symbols: | unknown protein; Has 257 Blast hits t... 1009 0.0
> AT2G14045.1 | Symbols: | unknown protein; Has 257 Blast hits
to 257 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa
- 130; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes
- 80 (source: NCBI BLink). | chr2:5906550-5908374 FORWARD
LENGTH=813
Length=813
Score = 1009 bits (546), Expect = 0.0
Identities = 654/705 (93%), Gaps = 12/705 (2%)
Strand=Plus/Plus
Query 1 AGAGAGAGCTTTTACTCGTTGCAGGATCTAAATAGGTCCAAGCTTGTCATGCAGCTTGGA 60
|||||||||||||| || ||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 96 AGAGAGAGCTTTTATTCTTTGGAGGATCTAAATAGGTCCAAGCTCGTCATGCAGCTAGGA 155
Query 61 AAAAGAAGAGGTTTAATATACAGTTATTAGAAACATCAAAGTTTCTTTTGTGTTTTGTCG 120
||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 156 AAAAGAAGAGGATTAATATACAGTTATTAGAAACATTAAAGTTTCTTCTGTGTTTTGTAG 215
Query 121 AACAAGGAGATGATGCGGTACAAAGAGGAGAAAGAGGTGAAGAAGGAAGCTTTCAGGAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AACAAGGAGATGATGCGGTACAAAGAGGAGAAAGAGGTGAAGAAGGAAGCTTTCAGGAAG 275
Query 181 TATTTGGAGTCCAGTGGAGTTCTTGATTCTCTCACCAAAGTTCTGGTTTCTCTGTATGAG 240
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 276 TATTTGGAGTCAAGTGGAGTTCTTGATTCTCTTACTAAAGTTCTGGTTTCTCTGTATGAG 335
Query 241 CAGAATGACAAGCCTTCCTCTGCTCTAGAATTCATTCAACAAAAGCTAGGTGGTCCATCT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CAGAATGACAAGCCTTCCTCTGCTCTAGAATTCATTCAACAAAAGCTAGGTGGTCCATCA 395
Query 301 GTGTCTGACTATGAGAAGCTTCAAGCTGAGAAGTCTGATCTTCAGATAAAATACAATGAG 360
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 396 GTCTCTGACTATGAGAAGCTTCAAGCTGAGAAGTCTGATCTTCAAATAAAGTACAATGAG 455
Query 361 CTTTTGGCTAAACATCAGGAAACCCTGAGAGAGTTAAATGGACTGAAGAGCTTGCATTCG 420
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 456 CTTTTGGCTAAACATCAGGAAACCCTGAGAGAGTTAAATGGAGTGAAGAGCTTGCATTCA 515
Query 421 CGAAAGTCTTCAAAAGATGATGCAGACAGAGAGACCCTTGAAGAC-GAACACACGACCCT 479
||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 516 CGAAACTCTTCAAAAGATGATGCAGACAGAGAGACCCTTGAAG-CTGAACACACGACCTT 574
Query 480 CGTCACTCCTCACCACTAAATGTGTC-CTTACTGTATATGTAATTCCCATTGTTTCGATC 538
|||||||||||||||||| | || | |||||||||||||||||||| | ||| | |||
Sbjct 575 AGTCACTCCTCACCACTAACTCTG-CACTTACTGTATATGTAATTCC--T-GTTACTATC 630
Query 539 TCCGTTTACGCATTTACGGCAGCAATAGAAAGaaaaaaaGAACGAAA-CAAAACCACGCA 597
| ||||||| ||||||||||| || ||||| |||||| |||| ||| |||| |||||||
Sbjct 631 TTCGTTTACATATTTACGGCAGTAAAAGAAA-AAAAAA-GAACAAAAACAAA-CCACGCA 687
Query 598 TAGATGAGTTTTCCCGGCAACAATGATCA-TTTCTTTGTTTAAATCTCCATTTGCTCTCT 656
||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 688 TAGATGAGTTTTCTAGGCAACAATGATTAGTTTCTTTGTTTAAATTTCCATTTGCTCTCT 747
Query 657 TTCATTCATCTACATCACCAGTGTTTTGGAGTTTTAACGTTATAA 701
||||||||||||||||||||||||| | ||||||| |||| ||||
Sbjct 748 TTCATTCATCTACATCACCAGTGTTGTAGAGTTTTTACGTAATAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33958283372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5