BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480329
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14060.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1327 0.0
> AT2G14060.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr2:5914445-5915767
REVERSE LENGTH=1149
Length=1149
Score = 1327 bits (718), Expect = 0.0
Identities = 906/993 (91%), Gaps = 27/993 (3%)
Strand=Plus/Plus
Query 1 ATGAAAGGAGGAACAGGAGACCATAGTTACGCTACTAATTCACATTATCAGAGAAGTGTT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGGAGGAACAGGAGACCATAGTTATGCTACTAATTCACATTATCAGAGAAGTGTT 60
Query 61 TTCTTTGAGATACAACCTATGGTCATAGA-AAGCGTAAGAGAAATGCTAGTGAATGTTGA 119
|||| ||||||||||||| |||||||||| || |||||||||||||||| |||| ||
Sbjct 61 TTCTATGAGATACAACCTTTGGTCATAGAGAA-CGTAAGAGAAATGCTACTGAAAAATGG 119
Query 120 TTTTCCTGGTTGCATCAAAGTGGTAGACTTGGGTTGTTCTACTGGACAAAACACGGTGTT 179
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTTCCTGGTTGCATCAAAGTGGCAGACTTGGGTTGTTCTACTGGACAAAACACGGTGTT 179
Query 180 GGCCATGTCCGCGATCGCCTACACGATCTTAGAGTCGTACCAACAAATGAGTAAGAACCC 239
|||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||
Sbjct 180 GGCCATGTCCGCAATCGCCTACACGATCATGGAGTCATACCAACAAATGAGTAAAAACCC 239
Query 240 ACCAGAAATCGACTGTTATTTGAACGATCTTCCAGAGAACGATTTCAATACCACCTTCAA 299
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 ACCAGAAATCGATTGTTATTTGAACGACCTTCCAGAGAACGATTTCAATACCACCTTCAA 299
Query 300 GTTGATTCCTTCTTTCCAAGAGAAGCTGAAAAGGGAGGCTAAAGGAAAGTGCTTTGTCTC 359
|||| ||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 300 GTTGTTTCATTCTTTCCAAGAGAAGCTGAAACCGGAGGTTAAAGGAAAGTGGTTTGTCTC 359
Query 360 GGGAGTCCCCGGTTCTTTTTACAGAAGGCTATTACCAAGAAAGTCTCTCCATTTTGTTCA 419
||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 360 GGGAGTCCCGGGTTCTTTTTACTCAAGGCTATTCCCAAGAAAGTCTCTCCATTTTGTTCA 419
Query 420 TTCAGCTTTTAGTATCCATTGGCTTTCTAAAATTCCAAATGGCCTTGAGTGCAACACTAA 479
||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 420 TTCAGCTTTTAGTATCCATTGGCTTTCTAGAATTCCAGATGGCCTTGAGAGCAACACTAA 479
Query 480 AAGCATTCATATTAAATATCCATACCCTCCAAATGTCTACAAGAGTTATTTAAATCAGTT 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 AAGCATTCATATTAAATATCCATACCCTTCAAATGTCTACAAGAGTTATTTAAATCAGTT 539
Query 540 CAAGA-ATGATTTTTCAT-GTTTCTTAAAAATGCGTTCAGAAGA-GACAGTGCATAATGG 596
||||| | |||||||| | ||| ||||||||||||||||||||| | ||||||||||||
Sbjct 540 CAAGATA-GATTTTTCGTTGTT-CTTAAAAATGCGTTCAGAAGAAGT-AGTGCATAATGG 596
Query 597 ACATATGGTTCTAACGTTCGTGGGAAGAAAGGTTTCGGACACTTTATCGAAAGACTGTTT 656
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 597 ACATATGGTTCTAACGTTCGTGGGAAGAAAGGTTTCCGACACTTTATCCAAAGATTGTTT 656
Query 657 CCAAGTTTGGTCATTGTTATCTGATTGCCTCCTCGATCTAGCCTCAGAGGGGTTTGTGAA 716
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 657 CCAAGTTTGGTCGTTGTTATCCGATTGCCTCCTCGATCTAGCCTCCGAGGGGTTTGTGAA 716
Query 717 TAAATCAGTGATGGAATCGTTTAACATGCCATTCTACAATCCAAATGAAGAAGAGGTGAG 776
| ||| || | |||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 717 CGATTCAATGGTAAAATCATTTAACATGCCATTCTACAATCCAAACGAAGAAGAGGTAAG 776
Query 777 GGAAGTTATCTTAAAGGAAGGTTCCTTCGATATCAACAAGATCGAGAAATTTGACCATGT 836
||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 777 AGAATTTATCTTAAAGGAAGGTTCCTTCGAGATCACCAAGATCGAGAAATTCGACCATGT 836
Query 837 TGTCCCGTATAAAATTGACCGTGAGGAAGAAGATGAGGACCAATCACTTC-G--G----- 888
|||||| || ||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 837 TGTCCCATACAAAATTGACCGTGAGGAAGAAGATGAGGAGCAATCACTTCAGTTGGAAGC 896
Query 889 T--T-----G---G-AAGCTGGGCAAGATGCATCACCGAACCATTGCTCGTTGCTTATTT 937
| | | | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 897 TGGTATAAAGCATGCAAGCTGGGCAAGATGCATCACCGAACCATTGCTCGTTGCTCATTT 956
Query 938 TGGAGATGCAATTATCGAACCGGTGTTCAACAA 970
|||||||||||||| |||||||||||||||||
Sbjct 957 CGGAGATGCAATTATAGAACCGGTGTTCAACAA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5