BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480330

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G14070.1 | Symbols:  | wound-responsive protein-related | ch...   436    8e-122
  AT2G14090.1 | Symbols:  | pseudogene, expressed protein | chr2:...   104    9e-22 


> AT2G14070.1 | Symbols:  | wound-responsive protein-related | 
chr2:5921881-5922990 FORWARD LENGTH=591
Length=591

 Score =  436 bits (236),  Expect = 8e-122
 Identities = 265/279 (95%), Gaps = 2/279 (1%)
 Strand=Plus/Plus

Query  293  GTGCTGCTGCAA-CTACAAGACACACCTCGTGGATAGTGGCTTCGGCCATAGCCGCCGTG  351
            |||||||||||| | |||||||||||||||||||| |||||| ||||||| || ||||||
Sbjct  314  GTGCTGCTGCAAGC-ACAAGACACACCTCGTGGATGGTGGCTACGGCCATCGCTGCCGTG  372

Query  352  GAAGCTCGTTGGAACTATCCCCTCCGTTTTTTCAACAAAGATGTCAAAGCTCGTCTTCGT  411
            ||| |||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||
Sbjct  373  GAAACTCGTTGGAACTATCCTCTCCGTTTTTTCAACAAAGATGTGAGGGCTCGTCTTCGT  432

Query  412  GCCATCGCTGTCACTTCCCGTCCACCTTCCTCCGcttcttcttcttcttcttcttcGGCT  471
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  433  GCCATCGCTGTCACTTCTCGTCCACCTTCCTCCGCTTCTTCTTCTTCTTCTTCTTCGGCT  492

Query  472  GATTTAGTCAAGGACAATCATCCTATGCCTAAATCTGAAGCTTCCATGGAAAGAGTTATG  531
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  493  GATTTAGTCAAGGAGAATCATCCTATGCCTAAATCTGAAGCTTCCATGGAAAGAGTTATG  552

Query  532  GGTCTTAGCTGCTTTGGCCCAACCACTGTTCGATTCTAG  570
             ||||||||||||||||||||||||||||||||||||||
Sbjct  553  TGTCTTAGCTGCTTTGGCCCAACCACTGTTCGATTCTAG  591


> AT2G14090.1 | Symbols:  | pseudogene, expressed protein | chr2:5930000-5931585 
REVERSE LENGTH=1586
Length=1586

 Score =  104 bits (56),  Expect = 9e-22
 Identities = 56/56 (100%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  18    ATGCAAGATCCAAGTAATTTCTGACAACCTCAGCTTATCTTTTTCCTTTTCCACAA  73
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1493  ATGCAAGATCCAAGTAATTTCTGACAACCTCAGCTTATCTTTTTCCTTTTCCACAA  1548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5