BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480332
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14110.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1042 0.0
> AT2G14110.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr2:5951887-5953155 FORWARD LENGTH=844
Length=844
Score = 1042 bits (564), Expect = 0.0
Identities = 644/682 (94%), Gaps = 8/682 (1%)
Strand=Plus/Plus
Query 1 CCATTAACGTCTCGA-TTCGACTGTC-AGAATTTTTGTAAAACGCGAACTCCGACAATCT 58
|||||||||||| || ||||| |||| |||| ||||||||||||| |||||||| |||||
Sbjct 26 CCATTAACGTCTGGATTTCGATTGTCAAGAAGTTTTGTAAAACGCAAACTCCGATAATCT 85
Query 59 TTCTCTAATCTCCGATCGTGTTTTCTTAGTGAGATGTCGGAAGAGATGGTAAAAGATGAA 118
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 86 TTCTCTAATCTCCGATCGTGTTTTCTTAGTGAGATGGCGGAAGAGAAGGTAAAAGATGAA 145
Query 119 GCGATGCAAATAATGGGAATGTTTCAAATTCTTCCGAGACTTGTCGTCTTTGATCTCGAT 178
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 GCTATGCAAATAATGGGAATGTTTCAAATTCTTCCGAGACTTGTCGTCTTTGATCTCGAT 205
Query 179 TATACTCTCTGGCCTTTTTACTGTGAATGCCGTTCGAAACGAGAAATGCCGTCTATGTAT 238
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 206 TATACTCTCTGGCCTTTCTACTGTGAGTGCCGTTCGAAACGAGAAATGCCATCTATGTAT 265
Query 239 CCACAAGCAAAGGGTATATTGAGTGCTCTGAAAGAGAAGGGTATTGAAATGGCTATTGCT 298
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 266 CCACAAGCAAAGGGTATATTGAGTGCTTTGAAAGAGAAGGGTATCGAAATGGCTATTGCT 325
Query 299 TCGAGATCTCCTACTTCGGATATTGCTAACACATTTCTTGATAAATTGAACATCAAGCCT 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 326 TCGAGATCTCCTACTTCAGATATTGCTAACACATTTCTTGATAAATTGAACATTAAGCCC 385
Query 359 ATGTTTGTCGCCAAGGAAATATACTCAAGTTGGAGTCACAAGACGGAACATTTTCAGAAG 418
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 386 ATGTTTGTGGCCAAGGAAATATACTCAAGTTGGAGTCATAAGACGGAACATTTTCAGAAG 445
Query 419 ATACACACGAGAACGGGAGTGCCTTTTACTGCGATGCTCTTCTTCGATGATGAGGACAGA 478
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| ||
Sbjct 446 ATACACACAAGAACGGGAGTGCCGTTTACCGCGATGCTCTTCTTCGATGATGAAGACCGA 505
Query 479 AACATTAAATCAGTTTCGAAAATGGGAGTGACAAGCATCCTTGTGGGTGATGGCGTTACG 538
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 506 AACATTAAATCAGTTTCGAAAATGGGAGTGACAAGCATCCTTGTTGGTGATGGGGTTACG 565
Query 539 CTTGGAGCATTTAGACAAGGGCTTACTGAATTTACTCAAAATCATAACAGTATCGAGAAG 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 566 CTTGGAGCATTTAGACAAGGGCTTACTGAATTTACTCAAAATCATAATAGTATCGAGAAG 625
Query 599 AATAAACAGGTTTGGCGCGACAAGTATTCCGGAAAGCCTACATCATCGGAGTTGGAGACG 658
||||||||||||||||| ||||||||||| ||||||||||||||||||||| | | |
Sbjct 626 AATAAACAGGTTTGGCGTGACAAGTATTCTGGAAAGCCTACATCATCGGAG----ACA-G 680
Query 659 GACAAAGATTGACATTCATTTG 680
||||||||| |||||||||||
Sbjct 681 -ACAAAGATTAACATTCATTTG 701
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 708 ATTAATCTAGACTAAAAACATGCTCTTCTCGA 739
||||||||||||||||||||||||||||||||
Sbjct 812 ATTAATCTAGACTAAAAACATGCTCTTCTCGA 843
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 679 TGGACACAAAACATTCTCGAGTGTTGTAT 707
|||||||||||||||||||||||||||||
Sbjct 722 TGGACACAAAACATTCTCGAGTGTTGTAT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5